View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_high_31 (Length: 423)

Name: NF15962_high_31
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_high_31
NF15962_high_31
[»] chr5 (2 HSPs)
chr5 (1-411)||(28150937-28151347)
chr5 (321-372)||(8968627-8968679)
[»] chr8 (4 HSPs)
chr8 (293-405)||(13274292-13274404)
chr8 (312-397)||(29275966-29276051)
chr8 (335-397)||(29261157-29261219)
chr8 (293-355)||(21240901-21240964)
[»] chr4 (5 HSPs)
chr4 (312-411)||(17538672-17538769)
chr4 (312-411)||(17539719-17539818)
chr4 (293-398)||(11913857-11913961)
chr4 (288-355)||(579731-579797)
chr4 (288-344)||(8532286-8532342)
[»] chr6 (2 HSPs)
chr6 (293-411)||(15953079-15953197)
chr6 (288-355)||(12877143-12877210)
[»] chr7 (3 HSPs)
chr7 (288-398)||(43697499-43697610)
chr7 (288-354)||(2433138-2433203)
chr7 (294-354)||(2435307-2435366)
[»] chr3 (2 HSPs)
chr3 (288-411)||(26362744-26362867)
chr3 (312-381)||(6239965-6240034)
[»] chr1 (2 HSPs)
chr1 (293-355)||(147002-147064)
chr1 (295-355)||(22020541-22020601)
[»] chr2 (1 HSPs)
chr2 (321-355)||(24411842-24411876)


Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 28150937 - 28151347
Alignment:
Q  1 aatgggagtttagttacacattatcatgatagcttacatgaaaagatataaatgagatgatgttgtatcaaatgcttgaagcttaaagatccaatgctcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28150937 aatgggagtttagttacacattatcatgatagcttacatgaaaagatataaatgagatgatgttgtatcaaatgcttgaagcttaaagatccaatgctcc 28151036  T
Q  101 acctttgataaacccttgttttctaaagtctccaggcatttctttcgttcaaaatagtgacagatttccaaaatggaaatgaatttttctttatatggtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28151037 acctttgataaacccttgttttctaaagtctccaggcatttctttcgttcaaaatagtgacagatttccaaaatggaaatgaatttttctttatatggtt 28151136  T
Q  201 aagtgataattcgttaagcggattgtatgctcactgaacgaattgtaatttctttgaaatctttttcagctcgtcaaagtgtgtcacttgtagtaaaatt 300  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28151137 aagtgataattcgttaagcggattatatgctcactgaacgaattgtaatttctttgaaatctttttcagctcgtcaaagtgtgtcacttgttgtaaaatt 28151236  T
Q  301 aggcataagaatatccctacaaataataatcaacatataaatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggtaacttatat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28151237 aggcataagaatatccctacaaataataatcaacatataaatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggtaacttatat 28151336  T
Q  401 gtctttatttt 411  Q
    ||||| |||||    
T  28151337 gtcttgatttt 28151347  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 8968627 - 8968679
Alignment:
Q  321 aaataataatcaacatataaatataagaatcaatt-tatgttaatgagaataa 372  Q
    ||||||||||||||| ||||||| ||| |||||||  ||||||||||||||||    
T  8968627 aaataataatcaacagataaatacaagtatcaattgaatgttaatgagaataa 8968679  T

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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 293 - 405
Target Start/End: Original strand, 13274292 - 13274404
Alignment:
Q  293 gtaaaattaggcataagaatatccctacaaataataatcaacatataaatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggta 392  Q
    ||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||  ||||||||||||| ||||||| |||||||| |    
T  13274292 gtaaaattaggcataagaatatttctacaaataataattaacatataaatataagaatcaatttatactaatgagaataattaagagagatttcaaggaa 13274391  T
Q  393 acttatatgtctt 405  Q
    |||||| ||||||    
T  13274392 acttatctgtctt 13274404  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 312 - 397
Target Start/End: Complemental strand, 29276051 - 29275966
Alignment:
Q  312 tatccctacaaataataatcaacatataaatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggtaactta 397  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||| ||||||    
T  29276051 tatctctacaaataataatcaaaatataaatataagaatcaatttatgttaatgggaataatcaagggagattttaaggaaactta 29275966  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 397
Target Start/End: Complemental strand, 29261219 - 29261157
Alignment:
Q  335 atataaatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggtaactta 397  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||| ||||||    
T  29261219 atataaatataagaatcaatttatgttaatgggaataattaagggagatttcaaggaaactta 29261157  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 21240901 - 21240964
Alignment:
Q  293 gtaaaattaggcataagaatatccctacaaataataatc-aacatataaatataagaatcaatt 355  Q
    ||||||||||| ||||||||||| ||||| ||||||||| || |||||||||||| ||||||||    
T  21240901 gtaaaattagggataagaatatctctacatataataatcaaatatataaatataaaaatcaatt 21240964  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 312 - 411
Target Start/End: Complemental strand, 17538769 - 17538672
Alignment:
Q  312 tatccctacaaataataatcaacatataaatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggtaacttatatgtctttatttt 411  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||| |||||    
T  17538769 tatctctacaaataataatcaatatataaatataagaatcaatttatgttaatgagaataatc--gagaggtttcaaggaaacttatatgtcttgatttt 17538672  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 312 - 411
Target Start/End: Complemental strand, 17539818 - 17539719
Alignment:
Q  312 tatccctacaaataataatcaacatataaatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggtaacttatatgtctttatttt 411  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||  ||||| |||||    
T  17539818 tatctctacaaataataatcaatatataaatataagaatcaatttatgttaatgataataatcaagagaggtttcaaggaaacttatcagtcttgatttt 17539719  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 293 - 398
Target Start/End: Original strand, 11913857 - 11913961
Alignment:
Q  293 gtaaaattaggcataagaatatccctacaaataataatcaacatataaatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggta 392  Q
    |||||||||| ||||| | |||| ||| |||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| || ||| |||||||| |    
T  11913857 gtaaaattagacataa-attatctctataaataataattaacatatgaatataagaatcagtttatgttaatgagaataatctagggagatttcaaggaa 11913955  T
Q  393 acttat 398  Q
    ||||||    
T  11913956 acttat 11913961  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 355
Target Start/End: Original strand, 579731 - 579797
Alignment:
Q  288 ttgtagtaaaattaggcataagaatatccctacaaataataatcaacatataaatataagaatcaatt 355  Q
    |||| ||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||| ||| ||||    
T  579731 ttgttgtaaaattagggataagaatatctctacaaataat-atcaagatataaatataaaaattaatt 579797  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 8532286 - 8532342
Alignment:
Q  288 ttgtagtaaaattaggcataagaatatccctacaaataataatcaacatataaatat 344  Q
    |||| |||||||||||  ||| |||||| ||||||||||||||||| ||||||||||    
T  8532286 ttgttgtaaaattaggggtaaaaatatctctacaaataataatcaatatataaatat 8532342  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 293 - 411
Target Start/End: Complemental strand, 15953197 - 15953079
Alignment:
Q  293 gtaaaattaggcataagaatatccctacaaataataatcaacatataaatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggta 392  Q
    |||||||||| ||||||| |||| | | |||||||||||||||||| ||||||||||| ||||||  ||||||||||| ||||||||||||||||||| |    
T  15953197 gtaaaattagacataagattatctcaataaataataatcaacatattaatataagaatgaatttaaattaatgagaatgatcaagagaggtttcaaggaa 15953098  T
Q  393 acttatatgtctttatttt 411  Q
    |||||| | |||| |||||    
T  15953097 acttatctttcttgatttt 15953079  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 288 - 355
Target Start/End: Original strand, 12877143 - 12877210
Alignment:
Q  288 ttgtagtaaaattaggcataagaatatccctacaaataataatcaacatataaatataagaatcaatt 355  Q
    |||| |||| ||||||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||    
T  12877143 ttgttgtaagattaggcataagattatctctataaataataatcaatatataaatataagaatcaatt 12877210  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 398
Target Start/End: Complemental strand, 43697610 - 43697499
Alignment:
Q  288 ttgtagtaaaattaggcataagaatatccctacaaataataatcaacatataaatataagaatcaattta--tgttaatgagaataatcaagagaggttt 385  Q
    |||| ||||| |||||||||| | |||| ||||||||||||||||||  |||||||||||||||||||||  |||||||  ||||||||||| ||| |||    
T  43697610 ttgttgtaaatttaggcataa-attatctctacaaataataatcaacgaataaatataagaatcaatttatgtgttaatatgaataatcaagggagattt 43697512  T
Q  386 caaggtaacttat 398  Q
    ||||| |||||||    
T  43697511 caaggaaacttat 43697499  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 2433203 - 2433138
Alignment:
Q  288 ttgtagtaaaattaggcataagaatatccctacaaataataatcaacatataaatataagaatcaat 354  Q
    |||| |||||||||||||||| | |||| ||| |||||||||||||  |||||||| ||||||||||    
T  2433203 ttgttgtaaaattaggcataa-attatctctaaaaataataatcaatttataaataaaagaatcaat 2433138  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 2435366 - 2435307
Alignment:
Q  294 taaaattaggcataagaatatccctacaaataataatcaacatataaatataagaatcaat 354  Q
    ||||||||||||||| |  ||| ||| ||||||||||||| ||||||||| ||||||||||    
T  2435366 taaaattaggcataa-atcatctctaaaaataataatcaatatataaataaaagaatcaat 2435307  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 288 - 411
Target Start/End: Complemental strand, 26362867 - 26362744
Alignment:
Q  288 ttgtagtaaaattaggcataagaatatccctacaaataataatcaacatataaatataagaatcaatttatgttaatgagaataatcaagagaggtttca 387  Q
    |||| ||||| ||||| |||||| |||| | | |||| |||||||| |||||||||||| |||||||| |   ||||||||||||||||||||| ||| |    
T  26362867 ttgttgtaaatttaggtataagattatctcaataaatgataatcaatatataaatataaaaatcaattaaatataatgagaataatcaagagagatttta 26362768  T
Q  388 aggtaacttatatgtctttatttt 411  Q
    ||| ||||||| |||||| |||||    
T  26362767 aggaaacttatctgtcttgatttt 26362744  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 6239965 - 6240034
Alignment:
Q  312 tatccctacaaataataatcaacatataaatataagaatcaatttatgttaatgagaataatcaagagag 381  Q
    |||| ||| ||||||||| ||| |||||||||||| ||| ||||||| || |||||||||| ||| ||||    
T  6239965 tatctctataaataataaacaatatataaatataataattaatttatattgatgagaataaacaaaagag 6240034  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 147002 - 147064
Alignment:
Q  293 gtaaaattaggcataagaatatccctacaaataataatcaacatataaatataagaatcaatt 355  Q
    ||||||||| |||||||| |||| ||| |||||||||||||||||||||||||||||||||||    
T  147002 gtaaaattaagcataagattatctctataaataataatcaacatataaatataagaatcaatt 147064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 22020601 - 22020541
Alignment:
Q  295 aaaattaggcataagaatatccctacaaataataatcaacatataaatataagaatcaatt 355  Q
    |||||||| ||||| |  ||| ||| ||||||||||||| |||||||||||||||||||||    
T  22020601 aaaattagacataaaaccatctctataaataataatcaatatataaatataagaatcaatt 22020541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 355
Target Start/End: Original strand, 24411842 - 24411876
Alignment:
Q  321 aaataataatcaacatataaatataagaatcaatt 355  Q
    ||||||||||||| |||||||||||||||||||||    
T  24411842 aaataataatcaatatataaatataagaatcaatt 24411876  T

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