View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_high_37 (Length: 403)
Name: NF15962_high_37
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_37 |
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| [»] scaffold0108 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 12417313 - 12416929
Alignment:
| Q |
1 |
ctaaaatatgtatatgtttgttaagctttggcttacaaaaatccaattgagattaatgagaagttgaaagtacaaatgtgcaagcatttgataattttga |
100 |
Q |
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| T |
12417313 |
ctaaaatatgtatatgtttgttaagctttggcttacaaaaatccaattgagattaatgagaagttgaaagtacaaatgtgcaagcatttgataattttga |
12417214 |
T |
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| Q |
101 |
acaagaaatgattcattgaaatcaaataaatttcaacgaaatttaattttctatttctctaggcttgttccatttgcttcctttttagtataattcaagc |
200 |
Q |
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| T |
12417213 |
ataagaaatgattcattgaaatcaaataaatttcaatgaaatttaattttctatttctctaggcttgttccatttgcttcctttttagtataattcaagc |
12417114 |
T |
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| Q |
201 |
tcaatagtgttttattgttaacaattcgatgtcaacaaatttttataccattcagcactagcctttggtacacgcttgagattatcattaaagtcaacat |
300 |
Q |
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| T |
12417113 |
tcaatagtgttttattgttaacaattcgatgtcaacaaatttttataccattcagcactagcctttggtacacgcttgagattatcattaaagtcaacat |
12417014 |
T |
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| Q |
301 |
gataaagcccccaatgtccagaatagccctgatgaaattcaaaggtatcaaatgccggccaggcaaagtaaccacgaacgtttac |
385 |
Q |
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| T |
12417013 |
gataaagcccccaatgtccagaatagccctgatgaaattcaaaggtatcaaatgccggccaggcaaagtaaccacgaacgtttac |
12416929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 22 - 385
Target Start/End: Complemental strand, 19523 - 19158
Alignment:
| Q |
22 |
taagctttggcttacaaaaatccaattgagattaatgagaagttgaaagtacaaatgtgcaagcatttgataattttgaacaagaaatgattcattgaaa |
121 |
Q |
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| T |
19523 |
taagcttttgcttacataaattcaattgagcttaaaaaaacgttgaaactacagaagtgcaagtatttgacggtattgaacaataaatcattaatttaaa |
19424 |
T |
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| Q |
122 |
tcaaataaatttcaacgaaatttaattttctatttctctaggcttgttccatttgcttccttttt--agtataattcaagctcaatagtgttttattgtt |
219 |
Q |
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| T |
19423 |
tcgattaaatttcaatgaaatatatttttctatttctctatgtttgatccattttcttccctttttgagtacaatccaagctcaataggcttttattttc |
19324 |
T |
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| Q |
220 |
aacaattcgatgtcaacaaatttttataccattcagcactagcctttggtacacgcttgagattatcattaaagtcaacatgataaagcccccaatgtcc |
319 |
Q |
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| T |
19323 |
tataattcgatgtcataaaatttctataccatttagcactagcctttggcacacgcttgagattatcattaaaatcaacatgataaagccccatatggcc |
19224 |
T |
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| Q |
320 |
agaatagccctgatgaaattcaaaggtatcaaatgccggccaggcaaagtaaccacgaacgtttac |
385 |
Q |
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| T |
19223 |
agaataacccgcatgaaattcaaatgtatcaaatgctgcccaaacaaagtatccacgaacgtttac |
19158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 37 - 308
Target Start/End: Original strand, 25012686 - 25012949
Alignment:
| Q |
37 |
aaaaatccaattgagattaatgagaagttgaaagtacaaatgtgcaagcatttgataattttgaacaagaaatgattcattgaaatcaaataaatttcaa |
136 |
Q |
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||||||||||| ||| |||| || ||| |||||||| | ||||||||| |||||||||||||||| |||||||||||| ||||||| |||||||||| |
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| T |
25012686 |
aaaaatccaatcgagcttaaagaaaagatgaaagtaggtaaatgcaagcatctgataattttgaacaataaatgattcatttaaatcaattaaatttcaa |
25012785 |
T |
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| Q |
137 |
cgaaatttaattttctatttctctaggcttgttccatttgcttcctttttagtataattcaagctcaatagtgttttattgttaacaattcgatgtcaac |
236 |
Q |
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| T |
25012786 |
tgaaatttatttgtctttttctctatgtgtgatccatttgcttccctttttgta-aaatcaagctcaatagtgttttcttgtctataattaga------- |
25012877 |
T |
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| Q |
237 |
aaatttttataccattcagcactagcctttggtacacgcttgagattatcattaaagtcaacatgataaagc |
308 |
Q |
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|||||| ||||||||||| ||||| | ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25012878 |
aaatttctataccattcaacactaacatttggtacacgcttgagattatcattaaaatcaacatgataaagc |
25012949 |
T |
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