View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_high_38 (Length: 401)
Name: NF15962_high_38
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 32650960 - 32650608
Alignment:
| Q |
1 |
ctatcaccttcttccactttgatttcctctccacaactccaaccccatatccacataatcgaagaaggagacagaagatatttatagtggttagcnnnnn |
100 |
Q |
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| T |
32650960 |
ctatcaccttcttccactttgatttcctctccacaactccaaccccatatccacacaattgaagaaggagacagaagatatttacagtggttagcttttt |
32650861 |
T |
|
| Q |
101 |
nnaatcaactctttatttctcaaaacaaaaatctttcattcgttcatctctctccaccgctctcatctgcttcttcgatc----tcagcatctcaattcg |
196 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32650860 |
ttaatcaactctttatttctcaaaccaaaaatctttcattcgttcatctctctccaccgctctcatctgcttcttcgatcgatctcagcatctcaattcg |
32650761 |
T |
|
| Q |
197 |
tttactctttcctttcattaatttgcattatcgccgtgataaatggatcagaattgttctgatatttacacaaatataaacaaacccctcatgaaatgat |
296 |
Q |
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||||||||||||||||||| |||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32650760 |
tttactctttcctttcatttattttcattatggccgtgatgaatggatcagaattgttctgatatttacacaaatataaacaaacccctcatgaaatgat |
32650661 |
T |
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| Q |
297 |
ttcagttaatcattatgattgttcacgttctggtactttttcctttggattcc |
349 |
Q |
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| T |
32650660 |
ttcagttaatcattatgattgttcacgttctggtactttttcctttggattcc |
32650608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 33854179 - 33854239
Alignment:
| Q |
24 |
ttcctctccacaactccaaccccatatccacataatcgaagaaggagacagaagatattta |
84 |
Q |
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| T |
33854179 |
ttcctctccataactccaaacccatatccacacaatcgaagaaggagacaaaagatattta |
33854239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 12537407 - 12537362
Alignment:
| Q |
345 |
attcctaacgcccctgatgtt---tactttcttccaaggaagtttt |
387 |
Q |
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| T |
12537407 |
attcctaacgcccctgatgttgtttactttcttccaaggaagtttt |
12537362 |
T |
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