View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_high_47 (Length: 371)
Name: NF15962_high_47
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 4815798 - 4815456
Alignment:
| Q |
11 |
cgaagaaaatacaagtgataaaagtgcaaagaataacaaaagtgtttcctaaggtagtttagaagttaagttcatcaaaagctgctaaactacattgagt |
110 |
Q |
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| T |
4815798 |
cgaaaaaaatacaagtgataaaagtgcaaagaataacaaaagtgtttcctaaggtagtttagaagttaagttcatcaaaagctgctaaactacattgagt |
4815699 |
T |
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| Q |
111 |
cgagtctttattgtagcttgtttttctgatttaccttgaagtcgattgtgcatttgaagtcgaatagcatgctaagaatccaattgagttcataaatcat |
210 |
Q |
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| T |
4815698 |
cgagtctttattgtagcttgtttttctgatttaccttgaagtcgattgtgcatttgaagtcgaatagcatgctaagaatccaattgagttcataaatcat |
4815599 |
T |
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| Q |
211 |
ctaggaacttatgaaattcaacaacatacacaaagtcttgtagtataggatcagatagaacgatatgaagttcaaagagatctagcttcagatgaaagaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4815598 |
ctaggaacttatgaaattcaacaacatacacaaagtcttgtagtataggatcagatagaacgatatgaagttcaaagagatctagcttcagatgaaagaa |
4815499 |
T |
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| Q |
311 |
tggagtgttagacactaatatagagaagatgtagggttctagc |
353 |
Q |
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| T |
4815498 |
tggagtgttagacactaatatagagaagatgtagggttctagc |
4815456 |
T |
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