View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_high_49 (Length: 362)
Name: NF15962_high_49
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_49 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 38736155 - 38735813
Alignment:
| Q |
1 |
tcataatccttgcattttgagtaagcatgaactacatgattcaaaaacaccaagttgtctctgtcaccaaaaccagattttaaaacatgcccatgaatgc |
100 |
Q |
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| T |
38736155 |
tcataatccttgcattttgagtaagcatgaactacatgattcaaaaacaccaagttgtctctgtcaccaaaaccagattttaaaacatgcccatgaatgc |
38736056 |
T |
|
| Q |
101 |
aattcgcttgtttcagagacccgttttgttcgcaggattttaagagatcaatgagtggttgaatgttgggttgtttttgttgtgtttctgtggctgtaag |
200 |
Q |
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| T |
38736055 |
aattcgcttgtttcagagacccgttttgttcgcaggattttaagagatcaatgagtggttgaatgttgggttgtttttgttgtgtttctgtggctgtaag |
38735956 |
T |
|
| Q |
201 |
tgcaaggggtttggttaatcttcttccatgtgggtcctttgaaggctttgggttttcggacataaaatgaatagggataaggtagtggtttgtacgatga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38735955 |
tgcaaggggtttggttaatcttcttccatgtgggtcctttgaaggctttgggttttcagacataaaatgaatagggataaggtagtggtttgtacgatga |
38735856 |
T |
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| Q |
301 |
tgaattgtgcttactttgtttgtggaagcatgagggagattac |
343 |
Q |
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| T |
38735855 |
tgaattgtgcttactttgtttgtggaagcatgagggagattac |
38735813 |
T |
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