View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_high_58 (Length: 340)

Name: NF15962_high_58
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_high_58
NF15962_high_58
[»] chr1 (2 HSPs)
chr1 (17-322)||(7100578-7100868)
chr1 (17-322)||(7580372-7580668)
[»] chr5 (16 HSPs)
chr5 (17-320)||(17984043-17984352)
chr5 (27-322)||(29854468-29854763)
chr5 (27-322)||(30476532-30476827)
chr5 (11-322)||(30520263-30520574)
chr5 (11-322)||(30560603-30560914)
chr5 (46-168)||(30401388-30401510)
chr5 (46-154)||(30207847-30207955)
chr5 (27-322)||(29873331-29873626)
chr5 (28-154)||(30329496-30329622)
chr5 (287-322)||(17417507-17417542)
chr5 (60-167)||(30675975-30676082)
chr5 (27-100)||(30241047-30241120)
chr5 (46-168)||(17417341-17417463)
chr5 (136-172)||(30061679-30061715)
chr5 (136-172)||(30484708-30484744)
chr5 (136-172)||(30750953-30750989)
[»] chr4 (3 HSPs)
chr4 (27-172)||(52353268-52353413)
chr4 (94-190)||(13617891-13617987)
chr4 (17-78)||(13617991-13618052)
[»] chr3 (1 HSPs)
chr3 (27-180)||(25292601-25292754)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 7100868 - 7100578
Alignment:
Q  17 gaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatcc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||        
T  7100868 gaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcggtgtatgtgcttgatgatatccttgatgaatgttccatcaa---- 7100773  T
Q  117 gctcgacttaagggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtcata 216  Q
               ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7100772 -----------gggcttatcctctttcaaaccaaagaatgtcatgtttcgccattacataggcagtaggttgaatgaaattactagcagactcagtcata 7100684  T
Q  217 ttgcagaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttattgc 316  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100683 ttgccgaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttattgc 7100584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 7580372 - 7580668
Alignment:
Q  17 gaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatcc 116  Q
    |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||  |||||||||    
T  7580372 gaagcaattaactgaccgatctattcaaatatggttgcagcaactcaaagatgcggtgtatgtgcttgatgatatccttgatgagtgtttaatcaaatcc 7580471  T
Q  117 gctcgacttaagggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtcata 216  Q
      |||||| |||||         |||||||| |||||| ||||||||||| | |||  |||||| ||||||||| || ||| | ||||||||||  || |    
T  7580472 agtcgactcaaggg---------tttcaaactaaagaacgtcatgtttcgacgtgatttaggcactaggttgaaagagattgcaagcagactcaaccaaa 7580562  T
Q  217 ttgcagaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttattgc 316  Q
    |||| |||  |||||| || ||| |  ||||||||||| ||  ||||||  || |||||| |||||||||||| |||||||||||||||||| |||||||    
T  7580563 ttgctgaaaataagaacaagtttcttttacgagaaggtattgttgttacagaaaaaccaattgaagtggctgactggcgccaaaccagctccattattgc 7580662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 17984352 - 17984043
Alignment:
Q  17 gaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatcc 116  Q
    |||||| || ||||| || ||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||||||||| |||||||||    
T  17984352 gaagcatttgacagatcgttctattcaaatatggctgcagcaactcaaagatgcggtgtttgtgcttgatgatatcctagatgaatgttcgatcaaatcc 17984253  T
Q  117 gctcgacttaagggcttatcctctttca---aaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtc 213  Q
     ||| | ||||| | | |||||||||||   | ||||||||  |||||||||||| ||||||||||||||||||||| || ||| | || ||||||  |     
T  17984252 actcaatttaagagttcatcctctttcatcaatccaaagaacttcatgtttcgccgtgacataggcagtaggttgaaagagattgcaagtagactcgatt 17984153  T
Q  214 atattgcagaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaaca---accaactgaagtggctgaatggcgccaaaccagctcctt 310  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || |   ||||| |||||||||||||||||||||||||||| || |    
T  17984152 atattgctgaaggtaagaagaattttatgctacgagaaggtattactgttacggaaaaattaccaagtgaagtggctgaatggcgccaaaccagccccgt 17984053  T
Q  311 tattgctgaa 320  Q
    ||||||||||    
T  17984052 tattgctgaa 17984043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 27 - 322
Target Start/End: Complemental strand, 29854763 - 29854468
Alignment:
Q  27 acagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgactta 126  Q
    ||||||| ||||||| |  ||||||| || |||||||||||||| || ||||| || ||||||||||||||||| ||||| ||||| || | || |||||    
T  29854763 acagaccactctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaactta 29854664  T
Q  127 agggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtcatattgcagaagg 226  Q
      || ||| |||||||||||||||||||  |||||||||||||||| || ||||  |||||||| || ||||| || | | |   | ||||||| ||  |    
T  29854663 gaggattaacctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagattacaaggaaattggatgatattgctgatag 29854564  T
Q  227 taagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttattgctgaacc 322  Q
    |||||| || ||| | ||||| || |||  || ||||| | ||    ||| |||||| ||||||||||| |||||||||||| |||||||||||||    
T  29854563 taagaacaagttttttctacgggagggtactattgttaaggaaagctcaaatgaagtagctgaatggcgtcaaaccagctccattattgctgaacc 29854468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 322
Target Start/End: Complemental strand, 30476827 - 30476532
Alignment:
Q  27 acagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgactta 126  Q
    ||||||||||||||| |  ||||||| || |||||||||||||| || ||||| ||||||||||| |||||||||||||||||  ||||   | ||||||    
T  30476827 acagaccgctctattaaggtatggctccaacaactcaaagatgctgtatatgtgcttgatgatattcttgatgaatgttccattgaatctagtagactta 30476728  T
Q  127 agggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtcatattgcagaagg 226  Q
    | | ||  |||| |||||| | ||||||  |  ||||||||| |||||| ||||  |||||||| |||||||| || ||| ||  ||| ||||| ||| |    
T  30476727 aagcctcgtcctgtttcaacctaaagaacattgtgtttcgccgtgacatcggcaaaaggttgaaagaaattacaaggagattcgatcaaattgctgaaag 30476628  T
Q  227 taagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttattgctgaacc 322  Q
    |||  | || ||| |  ||||||| |||||   ||||| | ||   |||| |||||| ||||||||||||||||| |||||| |||||||||||||    
T  30476627 taaagacaagtttcttttacgagagggtgtcgttgttagggaaaggccaaatgaagttgctgaatggcgccaaacaagctccattattgctgaacc 30476532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 30520263 - 30520574
Alignment:
Q  11 tgagatgaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatc 110  Q
    ||||| ||| ||| ||||||||||||||||  |  ||||||| || ||||||||||||||| | ||  | || |||||||| |||||||| ||||||||     
T  30520263 tgagaagaaacaaataacagaccgctctataaaggtatggcttcaacaactcaaagatgcaatctacatactagatgatattcttgatgagtgttccatt 30520362  T
Q  111 aaatccgctcgacttaagggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactca 210  Q
     ||||| ||||||  |||||| |||| ||||| | |  ||||||| |||||||||||||| | || |||| |||||| || |||||||| | |||| ||     
T  30520363 caatccactcgacaaaagggcatatcttcttttacattaaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcg 30520462  T
Q  211 gtcatattgcagaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctt 310  Q
     | ||||||| ||| |||| || || ||| | |||| |||| ||||| |||||| | ||    |||   | |||||||||||||| ||||| |||||  |    
T  30520463 atgatattgctgaaagtaaaaacaagtttcttctacaagaatgtgttgctgttagggaaaggtcaatcaatgtggctgaatggcgtcaaactagctctat 30520562  T
Q  311 tattgctgaacc 322  Q
    ||||||||||||    
T  30520563 tattgctgaacc 30520574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 30560603 - 30560914
Alignment:
Q  11 tgagatgaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatc 110  Q
    ||||| ||| ||| ||||||||||||||||  |  ||||||| || ||||||||||||||| | ||  | || |||||||| |||||||| ||||||||     
T  30560603 tgagaagaaacaaataacagaccgctctataaaggtatggcttcaacaactcaaagatgcaatctacatactagatgatattcttgatgagtgttccatt 30560702  T
Q  111 aaatccgctcgacttaagggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactca 210  Q
     ||||| ||||||  |||||| |||| ||||| | |  ||||||| |||||||||||||| | || |||| |||||| || |||||||| | |||| ||     
T  30560703 caatccactcgacaaaagggcatatcttcttttacattaaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcg 30560802  T
Q  211 gtcatattgcagaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctt 310  Q
     | ||||||| ||| |||| || || ||| | |||| |||| ||||| |||||| | ||    |||   | |||||||||||||| ||||| |||||  |    
T  30560803 atgatattgctgaaagtaaaaacaagtttcttctacaagaatgtgttgctgttagggaaaggtcaatcaatgtggctgaatggcgtcaaactagctctat 30560902  T
Q  311 tattgctgaacc 322  Q
    ||||||||||||    
T  30560903 tattgctgaacc 30560914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 168
Target Start/End: Complemental strand, 30401510 - 30401388
Alignment:
Q  46 tatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgacttaagggcttatcctctttcaa 145  Q
    ||||||| || |||||||||||||| || ||||| || ||||||||||||||||| ||||| ||| | || |||||||||   |||| || |||||||||    
T  30401510 tatggctccaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcgatcgagtctgctcgacttggaggctcattctctttcaa 30401411  T
Q  146 accaaagaatgtcatgtttcgcc 168  Q
     ||||||||  || |||||||||    
T  30401410 cccaaagaacatcgtgtttcgcc 30401388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 30207955 - 30207847
Alignment:
Q  46 tatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgacttaagggcttatcctctttcaa 145  Q
    ||||||| || |||||||||||||| || ||||| || ||||||||||||||||| || || ||| | || ||||||||||  | || ||| ||||||||    
T  30207955 tatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgctcgatcgagtctgctcgacttattgcctcatcatctttcaa 30207856  T
Q  146 accaaagaa 154  Q
    |||||||||    
T  30207855 accaaagaa 30207847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 322
Target Start/End: Complemental strand, 29873626 - 29873331
Alignment:
Q  27 acagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgactta 126  Q
    ||||||||||||||| |  ||||||| || |||||||||||||  || ||||| || ||||||||||||||||| || || ||||| || | || |||||    
T  29873626 acagaccgctctattaaggtatggctacaacaactcaaagatgttgtttatgtgctcgatgatatccttgatgagtgctcgatcaagtctggtcaactta 29873527  T
Q  127 agggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtcatattgcagaagg 226  Q
      || | |  |||||| |||||||| ||  |||||||||||| ||| || ||||  |||||||| || ||||| || ||| |   | ||||||| ||  |    
T  29873526 gaggatcaatctcttttaaaccaaataacatcatgtttcgccttgagatcggcaacaggttgaaagagattacaaggagattggatgatattgctgatag 29873427  T
Q  227 taagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttattgctgaacc 322  Q
    |||||| || ||| | ||||| || |||  || ||||| | ||    ||| |||||| ||||||||||| |||||||||||| |||||| ||||||    
T  29873426 taagaacaagttttttctacgggagggtactattgttaaggaaagctcaaatgaagtagctgaatggcgtcaaaccagctccattattgttgaacc 29873331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 30329496 - 30329622
Alignment:
Q  28 cagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgacttaa 127  Q
    |||||||||||||| | |||||||| || ||| |||||||||   | ||||| |||||||||||||||||||| || |  ||| | || | |||| |||     
T  30329496 cagaccgctctattaagatatggcttcaacaaatcaaagatgatatatatgtgcttgatgatatccttgatgagtgcttgatcgagtctggtcgaattag 30329595  T
Q  128 gggcttatcctctttcaaaccaaagaa 154  Q
     |||| |||||||||||||||||||||    
T  30329596 aggctcatcctctttcaaaccaaagaa 30329622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 322
Target Start/End: Original strand, 17417507 - 17417542
Alignment:
Q  287 tgaatggcgccaaaccagctcctttattgctgaacc 322  Q
    ||||||||||||||||||||||||||||||||||||    
T  17417507 tgaatggcgccaaaccagctcctttattgctgaacc 17417542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 167
Target Start/End: Original strand, 30675975 - 30676082
Alignment:
Q  60 ctcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgacttaagggcttatcctctttcaaaccaaagaatgtca 159  Q
    ||||||||||| || ||||| || ||||||||||||||||| | ||| ||||| || | || |||||  || | ||||||| |||||||||||||  |||    
T  30675975 ctcaaagatgctgtttatgtgctcgatgatatccttgatgagtattcaatcaagtctggtcaacttagaggatcatcctctctcaaaccaaagaacatca 30676074  T
Q  160 tgtttcgc 167  Q
    ||||||||    
T  30676075 tgtttcgc 30676082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 30241047 - 30241120
Alignment:
Q  27 acagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatga 100  Q
    |||||| |||||||| |  |||||||||| |||||||||||||  || ||||| || |||||||||||||||||    
T  30241047 acagactgctctattaaggtatggctgcaacaactcaaagatgttgtttatgtgctcgatgatatccttgatga 30241120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 168
Target Start/End: Original strand, 17417341 - 17417463
Alignment:
Q  46 tatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgacttaagggcttatcctctttcaa 145  Q
    ||||||| || |||||||||||||  || ||||| || |||||||| |||||||| || || ||| | || | ||| ||||  |||| ||||| ||||||    
T  17417341 tatggcttcaacaactcaaagatgttgtttatgtgctagatgatattcttgatgagtgctcaatcgagtctggtcggcttagaggctcatcctatttcaa 17417440  T
Q  146 accaaagaatgtcatgtttcgcc 168  Q
    |||||||||  |||| |||||||    
T  17417441 accaaagaacatcatatttcgcc 17417463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 30061715 - 30061679
Alignment:
Q  136 cctctttcaaaccaaagaatgtcatgtttcgccatga 172  Q
    |||||||||||||||||||  ||||||||||||||||    
T  30061715 cctctttcaaaccaaagaacatcatgtttcgccatga 30061679  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 30484744 - 30484708
Alignment:
Q  136 cctctttcaaaccaaagaatgtcatgtttcgccatga 172  Q
    |||||||||||||||||||  ||||||||||||||||    
T  30484744 cctctttcaaaccaaagaacatcatgtttcgccatga 30484708  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 30750989 - 30750953
Alignment:
Q  136 cctctttcaaaccaaagaatgtcatgtttcgccatga 172  Q
    |||||||||||||||||||  ||||||||||||||||    
T  30750989 cctctttcaaaccaaagaacatcatgtttcgccatga 30750953  T

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Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 27 - 172
Target Start/End: Complemental strand, 52353413 - 52353268
Alignment:
Q  27 acagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgactta 126  Q
    ||||||||||||||| || ||||||| ||||||||||||||||| || || ||||| ||||||||||||||||||||||| ||||||||   ||||||||    
T  52353413 acagaccgctctattaaagtatggcttcagcaactcaaagatgctgtttacgttctcgatgatatccttgatgaatgttcgatcaaatctagtcgactta 52353314  T
Q  127 agggcttatcctctttcaaaccaaagaatgtcatgtttcgccatga 172  Q
     ||| ||||| || ||||||||||| ||| |  ||||||| |||||    
T  52353313 tgggtttatcgtcattcaaaccaaaaaatattgtgtttcgtcatga 52353268  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 13617987 - 13617891
Alignment:
Q  94 ttgatgaatgttccatcaaatccgctcgacttaagggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaa 190  Q
    ||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| |||| |  ||| || |  |||||||||||| |||||||||||    
T  13617987 ttgatgaatgttccatcaaatccactcgacttaagggcttgtccactttcaaactaaaggacatcaagtatttccatgacataggaagtaggttgaa 13617891  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 13618052 - 13617991
Alignment:
Q  17 gaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatg 78  Q
    ||||||||||| || | |||||||| |||||||||| || |||||| |||||||| ||||||    
T  13618052 gaagcaattaagagtctgctctattaaaatatggctccaacaactcgaagatgcaatgtatg 13617991  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 180
Target Start/End: Original strand, 25292601 - 25292754
Alignment:
Q  27 acagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgactta 126  Q
    ||||| ||||||||| |  ||||||| || |||||||||||||  || ||||| || ||||||||||||||||| || |  ||||||||   ||||||||    
T  25292601 acagatcgctctattaaggtatggctacaacaactcaaagatgttgtatatgtgctcgatgatatccttgatgagtgattgatcaaatctagtcgactta 25292700  T
Q  127 agggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggca 180  Q
      |||| |||||||||||||||||||||  ||||||||| |||| |||| ||||    
T  25292701 gaggctcatcctctttcaaaccaaagaacatcatgtttcaccattacattggca 25292754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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