View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_high_6 (Length: 570)

Name: NF15962_high_6
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_high_6
NF15962_high_6
[»] chr8 (12 HSPs)
chr8 (27-518)||(32166394-32166890)
chr8 (90-318)||(33897618-33897847)
chr8 (98-310)||(35574613-35574827)
chr8 (228-323)||(12736074-12736169)
chr8 (240-297)||(29969129-29969186)
chr8 (97-185)||(29969153-29969241)
chr8 (219-310)||(6630512-6630603)
chr8 (133-183)||(6803876-6803926)
chr8 (229-298)||(31475059-31475128)
chr8 (92-183)||(6630316-6630406)
chr8 (244-297)||(7405544-7405597)
chr8 (253-297)||(29093581-29093625)
[»] chr7 (18 HSPs)
chr7 (90-364)||(34891414-34891690)
chr7 (98-326)||(42012690-42012918)
chr7 (98-289)||(31171287-31171480)
chr7 (90-278)||(3191572-3191760)
chr7 (98-289)||(31152725-31152919)
chr7 (208-281)||(32138888-32138961)
chr7 (219-323)||(32962351-32962455)
chr7 (228-278)||(23944096-23944146)
chr7 (223-278)||(34891380-34891435)
chr7 (231-297)||(8354378-8354444)
chr7 (136-255)||(22593597-22593722)
chr7 (105-263)||(8900670-8900831)
chr7 (230-355)||(33362340-33362465)
chr7 (92-183)||(33362347-33362436)
chr7 (224-262)||(7463864-7463902)
chr7 (243-289)||(44755106-44755152)
chr7 (208-244)||(27651379-27651415)
chr7 (208-260)||(29152350-29152402)
[»] chr5 (23 HSPs)
chr5 (97-324)||(7113573-7113804)
chr5 (208-323)||(973111-973226)
chr5 (211-323)||(14138548-14138660)
chr5 (99-297)||(40483739-40483939)
chr5 (97-185)||(2243249-2243335)
chr5 (211-278)||(2243321-2243388)
chr5 (84-185)||(17739908-17740009)
chr5 (228-304)||(22780323-22780399)
chr5 (224-262)||(972845-972883)
chr5 (229-303)||(7215448-7215522)
chr5 (227-297)||(41264392-41264462)
chr5 (208-257)||(7215322-7215371)
chr5 (229-310)||(40483703-40483783)
chr5 (84-184)||(7215230-7215329)
chr5 (219-263)||(37077663-37077707)
chr5 (79-194)||(39730369-39730484)
chr5 (224-276)||(39808239-39808291)
chr5 (219-310)||(7982353-7982444)
chr5 (253-323)||(7982214-7982284)
chr5 (208-278)||(17736759-17736829)
chr5 (208-318)||(37077760-37077870)
chr5 (249-310)||(17739907-17739968)
chr5 (228-277)||(39730312-39730361)
[»] chr3 (9 HSPs)
chr3 (122-364)||(39341110-39341356)
chr3 (125-278)||(42091796-42091951)
chr3 (222-310)||(54437651-54437739)
chr3 (209-278)||(46303371-46303440)
chr3 (208-290)||(34761946-34762028)
chr3 (84-185)||(54437848-54437949)
chr3 (207-264)||(31758242-31758298)
chr3 (208-262)||(54437806-54437860)
chr3 (219-276)||(48646423-48646479)
[»] chr2 (19 HSPs)
chr2 (90-290)||(13712743-13712945)
chr2 (98-310)||(9050098-9050313)
chr2 (208-324)||(16576248-16576364)
chr2 (230-342)||(2909844-2909956)
chr2 (211-310)||(16863459-16863558)
chr2 (212-324)||(34176708-34176820)
chr2 (98-260)||(38576791-38576955)
chr2 (84-323)||(16576290-16576532)
chr2 (130-187)||(38576707-38576764)
chr2 (219-296)||(38576924-38577001)
chr2 (98-168)||(9931337-9931406)
chr2 (212-281)||(35370402-35370471)
chr2 (98-182)||(25606423-25606506)
chr2 (92-312)||(34176755-34176979)
chr2 (208-287)||(28282824-28282903)
chr2 (219-262)||(34176654-34176697)
chr2 (208-297)||(25606366-25606455)
chr2 (90-183)||(28282699-28282791)
chr2 (208-312)||(35371111-35371215)
[»] chr4 (13 HSPs)
chr4 (90-266)||(25234217-25234393)
chr4 (84-281)||(25062361-25062563)
chr4 (163-278)||(15131580-15131698)
chr4 (207-323)||(22050851-22050967)
chr4 (134-348)||(53999981-54000199)
chr4 (219-310)||(20512800-20512891)
chr4 (219-305)||(11020059-11020144)
chr4 (214-277)||(4115389-4115452)
chr4 (229-290)||(25062340-25062401)
chr4 (90-183)||(55897600-55897693)
chr4 (224-266)||(54000233-54000275)
chr4 (92-185)||(22050903-22050995)
chr4 (229-289)||(46431144-46431204)
[»] chr1 (24 HSPs)
chr1 (208-289)||(10775163-10775244)
chr1 (208-281)||(46080971-46081044)
chr1 (240-310)||(7104297-7104367)
chr1 (161-278)||(7997194-7997314)
chr1 (208-278)||(34601446-34601516)
chr1 (211-325)||(52432836-52432950)
chr1 (253-309)||(7104215-7104271)
chr1 (232-323)||(3367806-3367897)
chr1 (171-260)||(44342055-44342145)
chr1 (92-185)||(3232179-3232271)
chr1 (92-177)||(7104316-7104400)
chr1 (208-291)||(12144970-12145050)
chr1 (227-304)||(15321060-15321137)
chr1 (208-261)||(42819621-42819674)
chr1 (219-275)||(52432672-52432728)
chr1 (211-348)||(34601544-34601681)
chr1 (81-170)||(49897909-49897998)
chr1 (97-170)||(67982-68054)
chr1 (208-297)||(68097-68186)
chr1 (84-143)||(68139-68198)
chr1 (229-297)||(3231979-3232047)
chr1 (208-278)||(49897870-49897940)
chr1 (229-278)||(38839666-38839715)
chr1 (219-287)||(10775028-10775096)
[»] chr6 (11 HSPs)
chr6 (126-323)||(20068000-20068200)
chr6 (208-277)||(32342600-32342669)
chr6 (177-309)||(23577118-23577252)
chr6 (228-325)||(32047194-32047291)
chr6 (211-257)||(20206481-20206527)
chr6 (211-257)||(22100504-22100550)
chr6 (209-293)||(23577009-23577093)
chr6 (130-185)||(32047262-32047317)
chr6 (250-304)||(7716732-7716786)
chr6 (101-155)||(23577068-23577121)
chr6 (136-182)||(26236751-26236797)
[»] scaffold0136 (1 HSPs)
scaffold0136 (224-310)||(36946-37033)
[»] scaffold1743 (1 HSPs)
scaffold1743 (219-278)||(794-853)
[»] scaffold0047 (1 HSPs)
scaffold0047 (219-266)||(62744-62791)


Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 27 - 518
Target Start/End: Complemental strand, 32166890 - 32166394
Alignment:
Q  27 caatatatgaatgtggttttttcttacatagctgcttccaatcaaagtgtttcttcgaacttcttatcttcttcatttaacatgtgatttacatctcttt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32166890 caatatatgaatgtggttttttcttacatagctgcttccaatcaaagtgtttcttcgaatttcttatcttcttcatttaacatgtgatttacatctcttt 32166791  T
Q  127 tcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatagtttttcttactatcaatta 226  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32166790 -cgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaaagaaaaatgtatgctcatcgatagtttttcttactatcaatta 32166692  T
Q  227 tcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcattagaa 326  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  32166691 tcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctctttcgttttagaattgaatcttttttatcattagaa 32166592  T
Q  327 caaattacccctaatttatcaaaggataacatagaccttaccaa------tatgttgatgtgggaaccacatacatattgaaagtgtgtttagagagcat 420  Q
    |||||||||||||||| ||||||||||||||||| |||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32166591 caaattacccctaattcatcaaaggataacataggccttaccaatgaatgtatgttgatgtgggaaccacatacatattgaaagtgtgtttagagagcat 32166492  T
Q  421 ttatgattaggatatgacattactaacattagctaagtgataaggaagtcaatgattcaattttcattcttggcaataagattaaaaacattcattct 518  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32166491 ttatgattaggatatggcattactaacattagctaagtgataaggaagtcaatgattcaattttcactcttggcaataagattaaaaacattcattct 32166394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 90 - 318
Target Start/End: Original strand, 33897618 - 33897847
Alignment:
Q  90 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 189  Q
    |||||| |||||||||||||||||||||||||| ||||||||| |||||| ||||||  || |||| ||| ||||||||| | ||||| |||||||||||    
T  33897618 ttatctccttcatttaacatgtgatttacatct-ttttcgttctaaaatctaatcgtgtttatcatcagatgtaaattactctcaattaatcaaggaaaa 33897716  T
Q  190 atgtatgctcatcgatag-tttttctt-actatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcat 287  Q
    ||||| |||| ||||||  |||||||| |||||||||||  |||||||||| || ||||||||| ||||| || ||||| |||||||||||||  | |||    
T  33897717 atgtaggctcgtcgatatatttttctttactatcaattactattttcatctcaaaaacatcaaaattcttaatttccttcattcaacatgtaacctccat 33897816  T
Q  288 ctctttcgtttcagaattgaatcttttttat 318  Q
     | |||||||||| ||| ||||||| |||||    
T  33897817 ttatttcgtttcaaaatcgaatcttatttat 33897847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 98 - 310
Target Start/End: Complemental strand, 35574827 - 35574613
Alignment:
Q  98 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgta-tg 196  Q
    |||||| ||||| ||||||  |||||||| ||||||||||||||||| || |||||||||| |||||||||||| ||||||||||| ||| |||| |       
T  35574827 ttcattgaacatatgattttaatctcttt-cgttccaaaatcgaatcatagttgtcattagcggtaaattaccctcaattcatcaatgaataatggagac 35574729  T
Q  197 ctcatcgata--gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttc 294  Q
    ||||| ||||  ||||||||||| || | |||  ||||||||||||||||||||||| || |||||||| || ||||||||||| || | ||||| ||||    
T  35574728 ctcattgatagggtttttcttacaattagttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacatgtcatctccatctttttc 35574629  T
Q  295 gtttcagaattgaatc 310  Q
    ||| || ||| |||||    
T  35574628 gttccaaaatcgaatc 35574613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 323
Target Start/End: Original strand, 12736074 - 12736169
Alignment:
Q  228 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcatta 323  Q
    ||||| |||||||| ||||||||||||||||||||||||  |||||||||| |||| |||||| ||  ||| |||||  ||| || ||||||||||    
T  12736074 catttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtgatgtccatctccttttttttagaatcaaatgttatttatcatta 12736169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 29969129 - 29969186
Alignment:
Q  240 aagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 297  Q
    ||||||||||||||||||| || |||| ||||||||||| || |||||||||||||||    
T  29969129 aagaacatcaaacttcttcttccccttcattcaacatgtgatattcatctctttcgtt 29969186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 29969153 - 29969241
Alignment:
Q  97 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcatt-agaggtaaattacccccaattcatcaagg 185  Q
    ||||||| |||||||||| | ||||||||| ||||||| ||||||||  ||||||||||| || ||||||||| || |||||||||||||    
T  29969153 cttcattcaacatgtgatattcatctcttt-cgttccataatcgaattctacttgtcattaaggggtaaattatccacaattcatcaagg 29969241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 310
Target Start/End: Complemental strand, 6630603 - 6630512
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 310  Q
    |||||||| |||||||||||||||| ||| ||| |||||||||||||| ||| |||| || || | |||||| ||||||  | |||||||||    
T  6630603 atcaattaccattttcatcttaagatcattaaatttcttcatctccttcatttaacaagtgatctccatctcattcgttctataattgaatc 6630512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 6803926 - 6803876
Alignment:
Q  133 caaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 183  Q
    ||||||| |||| ||||||||||||| |||||||||| |||||||||||||    
T  6803926 caaaatcaaatcctacttgtcattaggggtaaattactcccaattcatcaa 6803876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 31475059 - 31475128
Alignment:
Q  229 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgttt 298  Q
    ||||| |||| ||||||||||||||||||||||| ||| |||||  |||| || ||||||||||| ||||    
T  31475059 atttttatctcaagaacatcaaacttcttcatcttcttgattcacaatgtgattttcatctcttttgttt 31475128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 6630406 - 6630316
Alignment:
Q  92 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 183  Q
    ||||| |||||| |||||||| | | |||||| || | || ||||||| |||| ||||||||||||| |||||||||| | |||||||||||    
T  6630406 atctttttcattcaacatgtgttatccatctcctt-catttcaaaatcaaatcctacttgtcattaggggtaaattactctcaattcatcaa 6630316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 7405597 - 7405544
Alignment:
Q  244 acatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 297  Q
    ||||||||| ||||||||||||  ||||||||||| || |||||||| ||||||    
T  7405597 acatcaaacgtcttcatctcctacattcaacatgtgatcttcatctcgttcgtt 7405544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 29093581 - 29093625
Alignment:
Q  253 ttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 297  Q
    |||||||||||||| ||||||||||| || | |||||||||||||    
T  29093581 ttcttcatctccttcattcaacatgtgatctccatctctttcgtt 29093625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 90 - 364
Target Start/End: Original strand, 34891414 - 34891690
Alignment:
Q  90 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 189  Q
    ||||||||||||||||||||||||| || |||||||| | |||| ||||||||| ||| ||||||| || ||||||||||||| | |||||||||||| |    
T  34891414 ttatcttcttcatttaacatgtgatctagatctcttt-cattcccaaatcgaattgtatttgtcatgaggggtaaattacccc-agttcatcaaggaaga 34891511  T
Q  190 atgtatgctcatcgatag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttca 286  Q
    || || ||||| |||||    ||||||||||||| | |||||||||| |||| |||||||||||| |||||||||||||| ||||||||||| || | ||    
T  34891512 atataggctcaccgatatggttttttcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatctcca 34891611  T
Q  287 tctctttcgtttcagaattgaatcttttttatcatt-agaacaaattacccctaatttatcaaaggataacatagacct 364  Q
    | |  ||||||  | ||||||||||| ||| | ||| | |  ||||||||||||||| || ||||| ||||||||||||    
T  34891612 tttgcttcgttataaaattgaatcttatttgttattgatagtaaattacccctaattcattaaagggtaacatagacct 34891690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 98 - 326
Target Start/End: Original strand, 42012690 - 42012918
Alignment:
Q  98 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgc 197  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||| ||  |||||| || | ||||||| |||||||| |||||||||||||||| |     
T  42012690 ttcatttaagatgtgatttacatct-ttttcgttccaaaatcgaatcatatatgtcatgagggataaatta-ccccaattaatcaaggaaaaatgtaagt 42012787  T
Q  198 tcatcgata---gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttc 294  Q
    ||||| |||    |||||||||  |||| ||| || ||| |||  ||||||||||||||| |||||||  |||||||||||||| || | ||| |  |||    
T  42012788 tcatcaatatggttttttcttagaatcagttaccacttttatcacaagaacatcaaactttttcatct-atttattcaacatgtgatctccatttacttc 42012886  T
Q  295 gtttcagaattgaatcttttttatcattagaa 326  Q
    |||  |||||| |||||| |||||||||||||    
T  42012887 gttcaagaattaaatcttatttatcattagaa 42012918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 98 - 289
Target Start/End: Complemental strand, 31171480 - 31171287
Alignment:
Q  98 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgc 197  Q
    |||||| || ||||||||| ||||||||| |||| || ||||||||| ||||||| |||| ||||||||||||||||||||||||||  | ||||||  |    
T  31171480 ttcattcaaaatgtgatttccatctcttt-cgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgtagac 31171382  T
Q  198 -tcatc--gatagtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatct 289  Q
     |||||    | ||||||||||| | |||||| |||||||||||||| |||||||| ||||||||| || ||  |||||||| |||| |||||||    
T  31171381 ttcatcattttggtttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatttctttcgttcaacatctaattttcatct 31171287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 90 - 278
Target Start/End: Complemental strand, 3191760 - 3191572
Alignment:
Q  90 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 189  Q
    |||||| |||||||||| |||||||||||||| |||| | || |||||| |||||||| ||| ||| |  ||||||||||| ||||| |||  |||||||    
T  3191760 ttatctccttcatttaagatgtgatttacatcccttt-catttcaaaattgaatcgtatttgacatgaagggtaaattaccgccaatacatggaggaaaa 3191662  T
Q  190 atgtatgctcatcgatagtttt-tcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    |||||  ||||   ||  |||| | ||||||||| ||||  ||||||||| || ||||||||| ||||||||||||||||||||||||||    
T  3191661 atgtagactcacatatgattttcttttactatcagttattcttttcatctcaaaaacatcaaagttcttcatctcctttattcaacatgt 3191572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 289
Target Start/End: Complemental strand, 31152919 - 31152725
Alignment:
Q  98 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgc 197  Q
    |||||| || ||||||| | ||||||||| |||| || ||||||||| ||||||| |||| ||||||||||||||||||||||||||  | ||||||  |    
T  31152919 ttcattcaaaatgtgatctccatctcttt-cgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgtagac 31152821  T
Q  198 -tcatcgat---agtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatct 289  Q
     |||||  |     |||||| ||| | |||||| |||||||||||||| |||||||| ||||||||| || || ||||||||| |||| |||||||    
T  31152820 ttcatcattttggttttttcatacaaccaattaccattttcatcttaaaaacatcaatcttcttcatttctttcattcaacatctaattttcatct 31152725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 32138961 - 32138888
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaat 281  Q
    |||||||||  |||||||| |||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  32138961 tttttcttaaaatcaattaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgtaat 32138888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 323
Target Start/End: Complemental strand, 32962455 - 32962351
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttat 318  Q
    |||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||| | || | ||| | ||| |||||| ||| ||||| | |||||    
T  32962455 atcaattatcatattcattttaagaaaatcaaactttttcatctcctttattcaacatatgatctacatattttttgtttcaaaatcgaatcatatttat 32962356  T
Q  319 catta 323  Q
    |||||    
T  32962355 catta 32962351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 23944096 - 23944146
Alignment:
Q  228 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    ||||||||||||||||||||||||||||||| |||| || |||||||||||    
T  23944096 cattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgt 23944146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 34891380 - 34891435
Alignment:
Q  223 attatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    |||||||||||||| |||||||||||||||||||| |||| ||| ||| |||||||    
T  34891380 attatcattttcatattaagaacatcaaacttctttatcttcttcatttaacatgt 34891435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 8354444 - 8354378
Alignment:
Q  231 tttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 297  Q
    |||||||| |||||||| |||||||| ||| ||||| ||||||||||| || ||||| |||||||||    
T  8354444 tttcatctcaagaacattaaacttctacatatccttcattcaacatgtgatattcatatctttcgtt 8354378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 255
Target Start/End: Complemental strand, 22593722 - 22593597
Alignment:
Q  136 aatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-ctcatcgatag-----tttttctt-actatcaattatc 228  Q
    |||||||||||| |||||||||| ||||||||||| ||||||||| || |   |||||| | ||||||||||      |||||||| || ||||||| ||    
T  22593722 aatcgaatcgtaattgtcattag-ggtaaattacctccaattcattaatgggtaatgtaggtctcatcgataagattttttttctttacaatcaattgtc 22593624  T
Q  229 attttcatcttaagaacatcaaacttc 255  Q
    |||||||||| ||||||||||||||||    
T  22593623 attttcatctcaagaacatcaaacttc 22593597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 263
Target Start/End: Complemental strand, 8900831 - 8900670
Alignment:
Q  105 aacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgct----ca 200  Q
    |||||||||| ||||| | |||| ||| || ||||||||  ||||||| ||||| | ||||||||||| |||||||||| | | |||||| |||    ||    
T  8900831 aacatgtgatctacatttttttttgtttcataatcgaattctacttgttattagggataaattacccc-aattcatcaatggataatgtaggcttcaaca 8900733  T
Q  201 tcgatagtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctc 263  Q
    |   |  |||||||||| || ||||| |||||| |||| ||||||| ||||||||||||||||    
T  8900732 tttttgttttttcttacaataaattaccatttttatctcaagaacaacaaacttcttcatctc 8900670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 355
Target Start/End: Complemental strand, 33362465 - 33362340
Alignment:
Q  230 ttttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcattagaacaa 329  Q
    ||||||| || |||||||||||||| || |||||||| ||||||||||| || | || |||||| |||  | ||| ||||| | |||| |||||||  ||    
T  33362465 ttttcattttcagaacatcaaactttttaatctccttcattcaacatgtgatttacaactcttttgttctaaaatcgaatcatatttaccattagagtaa 33362366  T
Q  330 attacccctaatttatcaaaggataa 355  Q
     |||||||||| | |||||| |||||    
T  33362365 cttacccctaactcatcaaatgataa 33362340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 33362436 - 33362347
Alignment:
Q  92 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 183  Q
    |||| ||||||| ||||||||||||||| ||||||| |||| ||||||||||| || ||  ||||||| |||| ||||||| || |||||||    
T  33362436 atctccttcattcaacatgtgatttacaactctttt-gttctaaaatcgaatcatatttaccattaga-gtaacttacccctaactcatcaa 33362347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 7463864 - 7463902
Alignment:
Q  224 ttatcattttcatcttaagaacatcaaacttcttcatct 262  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  7463864 ttatcattttcatttgaagaacatcaaacttcttcatct 7463902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 44755106 - 44755152
Alignment:
Q  243 aacatcaaacttcttcatctcctttattcaacatgtaatgttcatct 289  Q
    |||||||||||||||||| || ||| ||||||||||||| |||||||    
T  44755106 aacatcaaacttcttcatatcatttgttcaacatgtaatcttcatct 44755152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 27651415 - 27651379
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaa 244  Q
    |||||||||| |||||||||||||||||||| |||||    
T  27651415 tttttcttacaatcaattatcattttcatctcaagaa 27651379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 29152402 - 29152350
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 260  Q
    |||||||||| |||| |||  |||||||||| || ||||||||||||||||||    
T  29152402 tttttcttacaatcagttactattttcatctcaataacatcaaacttcttcat 29152350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 97 - 324
Target Start/End: Complemental strand, 7113804 - 7113573
Alignment:
Q  97 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccc-caattcatcaaggaaaaatgtat 195  Q
    |||||||||| |||||||||||||||||||| |||||| ||| |||||||| ||| ||| || ||||||||||||| ||||||||||||||||||||||     
T  7113804 cttcatttaagatgtgatttacatctctttt-gttccataattgaatcgtatttgacatcagcggtaaattacccctcaattcatcaaggaaaaatgtag 7113706  T
Q  196 gctcatcg--atag--tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctct 291  Q
    | || |||  ||||  ||||| |||| |||||||||||||||||||| ||||| || ||||||||||||||| || ||||||| ||| || ||||| |      
T  7113705 gttcgtcggtatagtattttttttaccatcaattatcattttcatctcaagaatattaaacttcttcatctcattcattcaacgtgtgattttcatttac 7113606  T
Q  292 ttcgtttcagaattgaatcttttttatcattag 324  Q
     ||||| || |||| |||||| |||||||||||    
T  7113605 atcgttccaaaattaaatcttatttatcattag 7113573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 208 - 323
Target Start/End: Original strand, 973111 - 973226
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattga 307  Q
    |||||||||| || | |||||||||| |||| || ||||| ||| |||||||||||||||||||||||||| || |||||||| ||| || || ||||||    
T  973111 tttttcttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctcattcattacaaaattga 973210  T
Q  308 atcttttttatcatta 323  Q
    ||| | ||||||||||    
T  973211 atcatatttatcatta 973226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 211 - 323
Target Start/End: Original strand, 14138548 - 14138660
Alignment:
Q  211 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 310  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||  ||||||| || |||||||||||||| ||||||| ||| |||| | ||| ||||     
T  14138548 ttcttacaatcaattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatgtaatcttcatcttttttgtttgaaaatcgaatt 14138647  T
Q  311 ttttttatcatta 323  Q
     | ||||||||||    
T  14138648 atatttatcatta 14138660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 297
Target Start/End: Original strand, 40483739 - 40483939
Alignment:
Q  99 tcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-c 197  Q
    ||||| |||||||||| | |||||| || ||||||||||||||||| ||||| ||||| | ||||| |||||| ||||||||||||  | ||  || | |    
T  40483739 tcattcaacatgtgatcttcatctcatt-cgttccaaaatcgaatcatacttatcattgggggtaatttaccctcaattcatcaagagataacataggcc 40483837  T
Q  198 tcatcgatag--tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcg 295  Q
    ||||||||||  |||||| ||| |||||||  ||  || || | ||||||||| ||||||||||||| ||||| ||||||||| || | |||||| ||||    
T  40483838 tcatcgataggttttttcgtacaatcaattcccaaatttatatcaagaacatccaacttcttcatcttctttactcaacatgtgatctccatctcattcg 40483937  T
Q  296 tt 297  Q
    ||    
T  40483938 tt 40483939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 2243335 - 2243249
Alignment:
Q  97 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 185  Q
    ||||||| |||||||||| | ||||| | ||||||| | ||||||||  ||||||||||||||||||||||| ||||||||||||||||    
T  2243335 cttcattcaacatgtgatctccatct-tcttcgttctagaatcgaattttacttgtcattagaggtaaatta-ccccaattcatcaagg 2243249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 2243388 - 2243321
Alignment:
Q  211 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    ||||||| || | ||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  2243388 ttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgt 2243321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 17739908 - 17740009
Alignment:
Q  84 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 182  Q
    |||||||| ||||||||||||||||||||||||| ||||||  ||||||||| ||||||||| ||||| | ||||| | | |||| | | ||||||||||    
T  17739908 aacttcttcatcttcttcatttaacatgtgattttcatctc-cttcgttccagaatcgaatcctacttattattagggatgaatttcactcaattcatca 17740006  T
Q  183 agg 185  Q
    |||    
T  17740007 agg 17740009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 22780399 - 22780323
Alignment:
Q  228 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaat 304  Q
    ||||||||||| || ||||  |||||||||||| ||||| ||||||||||| || |||||| ||||||||| |||||    
T  22780399 cattttcatctcaaaaacaataaacttcttcatatccttcattcaacatgtgatcttcatccctttcgttttagaat 22780323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 972845 - 972883
Alignment:
Q  224 ttatcattttcatcttaagaacatcaaacttcttcatct 262  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  972845 ttatcattttcatctcaagaacatcaaacttcttcatct 972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 7215522 - 7215448
Alignment:
Q  229 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaa 303  Q
    |||||||| | |||||||| |||||| ||||| | ||| ||||||||||| || ||||||||||||||| |||||    
T  7215522 attttcatatcaagaacattaaactttttcatattcttcattcaacatgtgatcttcatctctttcgttccagaa 7215448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 41264392 - 41264462
Alignment:
Q  227 tcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 297  Q
    |||||||||||| |||||||| |||||| ||||| |  || ||||||||||| || |||||||||||||||    
T  41264392 tcattttcatctcaagaacattaaactttttcatattgttcattcaacatgtgatcttcatctctttcgtt 41264462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 7215371 - 7215322
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttctt 257  Q
    |||||||||| ||||| || ||||||||||| ||||||||||||||||||    
T  7215371 tttttcttacaatcaactaccattttcatctcaagaacatcaaacttctt 7215322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 40483703 - 40483783
Alignment:
Q  229 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 310  Q
    |||||||||| || |||||||||||||||||||||  | ||||||||||| || |||||||| |||||| || ||| |||||    
T  40483703 attttcatctaaa-aacatcaaacttcttcatctcactcattcaacatgtgatcttcatctcattcgttccaaaatcgaatc 40483783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 7215329 - 7215230
Alignment:
Q  84 aacttcttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 183  Q
    |||||||| ||||||||||| || ||||||| | ||||| ||||| ||| ||||| ||||| || || ||||||  ||||||||||||| |||||| |||    
T  7215329 aacttcttttcttcttcattgaatatgtgatctccatct-ttttcattctaaaattgaatcatatttatcattaacggtaaattaccccgaattcaacaa 7215231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 37077663 - 37077707
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctc 263  Q
    |||| ||||||||||||||| |||||||| |||||||||||||||    
T  37077663 atcagttatcattttcatctcaagaacattaaacttcttcatctc 37077707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 39730484 - 39730369
Alignment:
Q  79 cttcgaacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaatt 177  Q
    ||||||||||||| |||| ||||||  || |||| || |||||||| || |||||||||||||||| |||  |||||| || |||||||||||  |||||    
T  39730484 cttcgaacttctttatctccttcatcgaagatgtaatatacatctcgtt-cgttccaaaatcgaattgtatatgtcatgaggggtaaattaccatcaatt 39730386  T
Q  178 catcaaggaaaaatgta 194  Q
    |||  | ||||||||||    
T  39730385 cattcaagaaaaatgta 39730369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 39808291 - 39808239
Alignment:
Q  224 ttatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 276  Q
    |||||||||||| ||||||| |||||||||| ||||||||||| ||| |||||    
T  39808291 ttatcattttcaccttaagaccatcaaactttttcatctccttcatttaacat 39808239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 310
Target Start/End: Complemental strand, 7982444 - 7982353
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 310  Q
    |||| ||| |||||||||||| ||||||||||| ||||||  ||| ||  || ||||||| || |||||||| || |||||| |||||||||    
T  7982444 atcagttaccattttcatcttgagaacatcaaatttcttcgactctttcttttaacatgtgatattcatctcctttgtttcataattgaatc 7982353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 7982284 - 7982214
Alignment:
Q  253 ttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcatta 323  Q
    |||||||||||||| ||||||||||| || |  ||||| ||| ||||||||||||||  | ||||||||||    
T  7982284 ttcttcatctccttcattcaacatgtgatttctatctccttcatttcagaattgaataatatttatcatta 7982214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 17736829 - 17736759
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    |||||||||| | |||||| ||||||||||| || || || |||||||||||||| ||| | |||||||||    
T  17736829 tttttcttacaaccaattaccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgt 17736759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 318
Target Start/End: Original strand, 37077760 - 37077870
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattga 307  Q
    |||||||||| |||| ||| ||||||||||| || ||||||||| ||||| || |  || ||||||||||| || |  || || ||| ||||| ||||||    
T  37077760 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtgatctctatatcattcatttcaaaattga 37077859  T
Q  308 atcttttttat 318  Q
    ||||| |||||    
T  37077860 atcttatttat 37077870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 17739907 - 17739968
Alignment:
Q  249 aaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 310  Q
    |||||||||||||| ||| ||| ||||||| || |||||||| |||||| |||||| |||||    
T  17739907 aaacttcttcatcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaatc 17739968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 39730361 - 39730312
Alignment:
Q  228 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 277  Q
    ||||||||||| ||||||||||||||| |||||||| || ||| ||||||    
T  39730361 cattttcatctcaagaacatcaaactttttcatctctttcatttaacatg 39730312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 7e-38; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 122 - 364
Target Start/End: Original strand, 39341110 - 39341356
Alignment:
Q  122 tcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttact 218  Q
    ||||| ||||| ||| ||||||| || || || | || ||||||||| || ||||| ||||||||||||| |||||||| |||||    |||||||||||    
T  39341110 tctttacgttctaaagtcgaatcatatttatcgtgaggggtaaattatcctcaattaatcaaggaaaaatatatgctcaccgatataattttttcttact 39341209  T
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttat 318  Q
    || | ||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||  || | ||| |  ||||||  | ||||||||||| |||||    
T  39341210 atgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatgagatctccatttacttcgttctaaaattgaatcttatttat 39341309  T
Q  319 cattaga-acaaattacccctaatttatcaaaggataacatagacct 364  Q
    |||||||   ||||||||||||||| |||||||| ||||||||||||    
T  39341310 cattagaggtaaattacccctaattcatcaaagggtaacatagacct 39341356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 125 - 278
Target Start/End: Complemental strand, 42091951 - 42091796
Alignment:
Q  125 tttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-ctcatcgatagtttttc-ttactatca 222  Q
    |||||||||| |||| | || ||||||| ||||| ||||||||||||||||||| ||||||   | |||||| |||| | ||  |||||| |||| || |    
T  42091951 tttcgttccataatcaagtcttacttgtgattaggggtaaattacccccaattcgtcaaggggtattgtatgtctcaccaatgctttttccttacaatta 42091852  T
Q  223 attatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    |||||||||||||||| || |||||||||||| |||||||| || ||| |||||||    
T  42091851 attatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgt 42091796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 54437651 - 54437739
Alignment:
Q  222 aattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 310  Q
    ||||| ||||||||||| || ||||| |||||||||||| ||||| ||| |||||||||  ||||||||||||||| ||||||| ||||    
T  54437651 aattaccattttcatctcaataacattaaacttcttcatatccttcatttaacatgtaaacttcatctctttcgttccagaatttaatc 54437739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 46303371 - 46303440
Alignment:
Q  209 ttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    ||||||||| ||||| ||||||||| ||||  ||| |||||||||||||||||| |||||||||||||||    
T  46303371 ttttcttacaatcaaatatcatttttatctatagagcatcaaacttcttcatcttctttattcaacatgt 46303440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 34762028 - 34761946
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctc 290  Q
    |||||||| | ||||||||||||||||||||  |||| ||||||| | || |||||||| | ||||||||| || ||||||||    
T  34762028 tttttctttcaatcaattatcattttcatctcgagaatatcaaacctttttatctccttcactcaacatgtgatcttcatctc 34761946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 54437848 - 54437949
Alignment:
Q  84 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 182  Q
    |||||||| |||||| |||||||||| ||| ||| ||||| ||||| ||  |||||| |||| || || ||||||||||||||||||||| |||||| ||    
T  54437848 aacttcttcatcttcctcatttaacacgtggtttccatct-ttttcattttaaaatcaaatcatatttatcattagaggtaaattacccctaattcaaca 54437946  T
Q  183 agg 185  Q
    |||    
T  54437947 agg 54437949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 31758242 - 31758298
Alignment:
Q  207 gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcc 264  Q
    ||||||||||| |||||||| |||||||||||||| || |||||||||||| ||||||    
T  31758242 gtttttcttacaatcaattaccattttcatcttaa-aatatcaaacttcttaatctcc 31758298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 54437806 - 54437860
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatct 262  Q
    |||||||||| |||| ||| |||||| |||| || ||||||||||||||||||||    
T  54437806 tttttcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatct 54437860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 48646423 - 48646479
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 276  Q
    |||||| | ||||||||||||||||||||||||||| ||||| | ||| |||||||||    
T  48646423 atcaatgaccattttcatcttaagaacatcaaactt-ttcatattcttcattcaacat 48646479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 90 - 290
Target Start/End: Complemental strand, 13712945 - 13712743
Alignment:
Q  90 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa-ggaaa 188  Q
    |||||| |||||||||||||||||| |||||||||||  ||||||||| | ||| ||| |||||||||| | |||||||||| |||| |||||| |||||    
T  13712945 ttatctccttcatttaacatgtgatctacatctctttg-gttccaaaacctaattgtatttgtcattagggataaattaccctcaatacatcaaaggaaa 13712847  T
Q  189 aatgtatgctcatcgata--gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttca 286  Q
    | |||| |||    ||||  |||||||||||||||| ||| ||||| |||||||||||||||||||||||| |||| ||||||||||||| |||| | ||    
T  13712846 attgtaggcttgctgataaggtttttcttactatcagttaccatttccatcttaagaacatcaaacttctttatcttctttattcaacatctaatctcca 13712747  T
Q  287 tctc 290  Q
    ||||    
T  13712746 tctc 13712743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 98 - 310
Target Start/End: Complemental strand, 9050313 - 9050098
Alignment:
Q  98 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg- 196  Q
    |||||||||||| ||||||||||||  ||| ||| || ||||||||| |||| ||||||||||||||||||||| ||||||||||||  | |||||  |     
T  9050313 ttcatttaacatttgatttacatcttcttt-gtttcataatcgaatcctactagtcattagaggtaaattaccctcaattcatcaagagataatgttggt 9050215  T
Q  197 ctcatcgat---agtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctcttt 293  Q
    ||| || ||   | |||||||||| |||| ||| ||||||||| | ||||||| ||||||||||||||||| | ||||||||| | || | |||||| ||    
T  9050214 ctcgtcaatataattttttcttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacatatgatctccatctcatt 9050115  T
Q  294 cgtttcagaattgaatc 310  Q
    |||| || ||| |||||    
T  9050114 cgttacaaaatcgaatc 9050098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 208 - 324
Target Start/End: Original strand, 16576248 - 16576364
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattga 307  Q
    |||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||||||||| || | | |||| |||||| |||||| ||    
T  16576248 tttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcga 16576347  T
Q  308 atcttttttatcattag 324  Q
    ||| |  ||||||||||    
T  16576348 atcatacttatcattag 16576364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 342
Target Start/End: Original strand, 2909844 - 2909956
Alignment:
Q  230 ttttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcattagaacaa 329  Q
    ||||||| |||| |||||||||||||||||||||||| |||||||||||||| | ||| |  ||| ||  | ||||||||||| ||||||||||| | ||    
T  2909844 ttttcattttaaaaacatcaaacttcttcatctccttcattcaacatgtaatctacatttacttcattctaaaattgaatcttatttatcattaggataa 2909943  T
Q  330 attacccctaatt 342  Q
     | ||||||||||    
T  2909944 ctgacccctaatt 2909956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 211 - 310
Target Start/End: Original strand, 16863459 - 16863558
Alignment:
Q  211 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 310  Q
    ||||||| |||| ||| ||||||||||| |||||||||||| |||||||||| |||||||||| |||| || | |||||| ||||||  ||||| |||||    
T  16863459 ttcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctccttcgttatagaatcgaatc 16863558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 212 - 324
Target Start/End: Original strand, 34176708 - 34176820
Alignment:
Q  212 tcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatct 311  Q
    |||||| |||| |||  ||| ||| |||| |||||||||| |||||||||||||| ||| ||||| | || |||||||||||||||||| ||| |||||     
T  34176708 tcttacaatcagttactattatcaccttaggaacatcaaaattcttcatctccttcatttaacatatgatcttcatctctttcgtttcataatcgaatca 34176807  T
Q  312 tttttatcattag 324  Q
    | ||| |||||||    
T  34176808 tatttttcattag 34176820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 98 - 260
Target Start/End: Complemental strand, 38576955 - 38576791
Alignment:
Q  98 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg- 196  Q
    |||||| |||||||||||| |||||| |||||| ||| |||| |||| || ||||||||||  |||||||| ||||||||||| ||||   |||||| |     
T  38576955 ttcattcaacatgtgatttccatctc-tttcgtaccataatcaaatcatatttgtcattaggagtaaatta-ccccaattcataaaggggtaatgtaggc 38576858  T
Q  197 ctcatcgata---gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 260  Q
    ||||||||||    |||||||||| |||| ||| ||||||||||| || |  |||||||||||||||    
T  38576857 ctcatcgataaggttttttcttacaatcagttaccattttcatctcaatataatcaaacttcttcat 38576791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 84 - 323
Target Start/End: Original strand, 16576290 - 16576532
Alignment:
Q  84 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 182  Q
    |||||||| |||| ||||||| |||||||||| | | |||| || ||||||| ||||||||| ||||| ||||||| ||||||||| ||| |||||||||    
T  16576290 aacttcttcatctccttcattcaacatgtgatctccttctcatt-cgttccagaatcgaatcatacttatcattaggggtaaattaaccc-aattcatca 16576387  T
Q  183 aggaaaaatgtatgctcatcg-atag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    |||   || ||| || |  || ||||   |||||||||| |||| ||||||||||||| | || |||| ||||| ||||||| ||||| ||| ||||||     
T  16576388 aggggtaacgtaggccccacggatagagttttttcttacaatcatttatcattttcatttcaaaaacaacaaacatcttcatatccttcatttaacatgc 16576487  T
Q  279 aatgttcatctctttcgtttcagaattgaatcttttttatcatta 323  Q
    ||| | |||||  |||||| ||  |||||||| | ||| ||||||    
T  16576488 aatctccatcttcttcgttacattattgaatcatatttgtcatta 16576532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 38576764 - 38576707
Alignment:
Q  130 ttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaa 187  Q
    ||||||||||||||| ||||||||||| |||||||||||||  | |||||||||||||    
T  38576764 ttccaaaatcgaatcatacttgtcatttgaggtaaattaccttcgattcatcaaggaa 38576707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 38577001 - 38576924
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgt 296  Q
    |||| ||| ||||||||||| |||||||| ||| ||||||||||| || ||||||||||| || | ||||||||||||    
T  38577001 atcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatctctttcgt 38576924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 9931337 - 9931406
Alignment:
Q  98 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaatta 168  Q
    ||||||| ||||||||| | |||||||||| ||||||||||||||||||| |||||||  | |||||||||    
T  9931337 ttcattttacatgtgatattcatctctttt-gttccaaaatcgaatcgtatttgtcatgtggggtaaatta 9931406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 35370402 - 35370471
Alignment:
Q  212 tcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaat 281  Q
    |||||| |||| ||| |||||| |||| ||||| | ||||||||||| ||||||| ||||||||||||||    
T  35370402 tcttacaatcagttaccattttaatctcaagaataccaaacttcttcgtctccttcattcaacatgtaat 35370471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 25606423 - 25606506
Alignment:
Q  98 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 182  Q
    |||||| ||||| |||| |||||||| || ||||||| || |||||| ||||||| ||||  |||||||||||| ||||||||||    
T  25606423 ttcattcaacatatgatatacatctcctt-cgttccataaacgaatcctacttgttattaagggtaaattaccctcaattcatca 25606506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 312
Target Start/End: Original strand, 34176755 - 34176979
Alignment:
Q  92 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaat 191  Q
    |||| ||||||||||||| |||| | ||||||||| |||| || ||||||||| || || |||||||   | ||||| |||||||||||||  | |||||    
T  34176755 atctccttcatttaacatatgatcttcatctcttt-cgtttcataatcgaatcatatttttcattaggattgaattatccccaattcatcattggaaaat 34176853  T
Q  192 gtatgc-tcatcgatag---tttttct---tactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgtt 284  Q
     || || |||| |||||   |||||||   ||| || | ||| ||||||||||| ||||||  ||||||| | ||||| ||| ||||||||||| || ||    
T  34176854 ctaggcatcattgataggattttttctccttacaattagttaccattttcatctcaagaac--caaacttgtacatcttcttcattcaacatgtgatatt 34176951  T
Q  285 catctctttcgtttcagaattgaatctt 312  Q
    ||||   ||| |||||||||||||||||    
T  34176952 catcctcttcatttcagaattgaatctt 34176979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 28282824 - 28282903
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcat 287  Q
    |||||||||| ||||||||||||||||||||  | || ||||||||| ||||| | |||   |||||||||||| |||||    
T  28282824 tttttcttacaatcaattatcattttcatctccataatatcaaactttttcatttgcttcgctcaacatgtaatcttcat 28282903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 34176654 - 34176697
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatct 262  Q
    |||| ||| ||||||||||||||||| |||||||||||||||||    
T  34176654 atcagttaccattttcatcttaagaatatcaaacttcttcatct 34176697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 297
Target Start/End: Original strand, 25606366 - 25606455
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 297  Q
    ||||||||||  |||| ||||||||||| ||  ||||||||||| ||||||||||  || ||||||||| | || | |||||| ||||||    
T  25606366 tttttcttacactcaaatatcattttcaactccagaacatcaaaattcttcatctgtttcattcaacatatgatatacatctccttcgtt 25606455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 28282699 - 28282791
Alignment:
Q  90 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 183  Q
    |||||| ||||||| || ||||||| | |||||| || ||||||| |||| |||  ||||||| ||||| |||||||||||  |||||||||||    
T  28282699 ttatctgcttcattcaatatgtgatctccatctcatt-cgttccataatcaaattttacttgttattaggggtaaattaccgtcaattcatcaa 28282791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 312
Target Start/End: Original strand, 35371111 - 35371215
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattga 307  Q
    ||||| |||| |||| ||| ||||||||| | ||||||||||||||||||  |  |||| ||| ||||||| || | |||||| || |||| | ||||||    
T  35371111 ttttttttacaatcatttaccattttcatatcaagaacatcaaacttctttgttaccttcatttaacatgtgatttccatctcctttgtttgataattga 35371210  T
Q  308 atctt 312  Q
    |||||    
T  35371211 atctt 35371215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 90 - 266
Target Start/End: Complemental strand, 25234393 - 25234217
Alignment:
Q  90 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 189  Q
    |||||| ||||||||||  ||||||||| | |||||  |||||||||||||||||||| ||||||| || ||||||||||||  ||||||||||||||||    
T  25234393 ttatctccttcatttaaggtgtgatttatacctctta-cgttccaaaatcgaatcgtatttgtcatgagcggtaaattacccgtaattcatcaaggaaaa 25234295  T
Q  190 atgtatgctcatcgata-gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctt 266  Q
    ||||| |||||| |||| | ||||||||  |||| ||| ||||||||||| |||||||||||| ||||| || |||||    
T  25234294 atgtaggctcattgatatggttttcttagcatcagttaccattttcatctcaagaacatcaaatttcttaatatcctt 25234217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 84 - 281
Target Start/End: Original strand, 25062361 - 25062563
Alignment:
Q  84 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 182  Q
    |||||||| |||| ||||||| |||||||||| | |||||| ||| |||||| |||| |||| ||||||| ||||| |||||||||||| ||||||||||    
T  25062361 aacttcttcatctgcttcattaaacatgtgatcttcatctccttt-gttccataatcaaatcctacttgttattaggggtaaattaccctcaattcatca 25062459  T
Q  183 aggaaaaatgtatgc-tcatcgat----agtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 277  Q
    ||||| |||||| || ||| | ||      |||||||||| |||||||| | ||||||||| ||||| ||||||||||||||||| |||  |||||| ||    
T  25062460 aggaataatgtaggcttcaccaatttggtttttttcttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatcttcttcgttcaacttg 25062559  T
Q  278 taat 281  Q
    ||||    
T  25062560 taat 25062563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 15131698 - 15131580
Alignment:
Q  163 aaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttca 259  Q
    |||||||||  ||||||||||| |  |||||| |||||||||||    ||||||||||||||| ||| |||||| |||| |||||||||||| |||||||    
T  15131698 aaattacccttaattcatcaagaattaatgtaggctcatcgatatggttttttcttactatcagttaccatttttatctcaagaacatcaaatttcttca 15131599  T
Q  260 tctcctttattcaacatgt 278  Q
    ||||||| ||||| |||||    
T  15131598 tctccttcattcagcatgt 15131580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 22050851 - 22050967
Alignment:
Q  207 gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattg 306  Q
    ||||||||||| || | |||||||||| ||||||| ||||  ||  |||||||||||||| ||||||||||| || |||||||| ||| ||||||||| |    
T  22050851 gtttttcttacaattagttatcatttttatcttaaaaacaataagtttcttcatctccttcattcaacatgtgatcttcatctcattcctttcagaatcg 22050950  T
Q  307 aatcttttttatcatta 323  Q
    |||| | ||||||||||    
T  22050951 aatcatatttatcatta 22050967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 348
Target Start/End: Complemental strand, 54000199 - 53999981
Alignment:
Q  134 aaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttactatcaattatcat 230  Q
    |||||||||||||| ||||||| |   ||||||||| | || ||||| ||  |||||||||   |||||||||    ||||||||||||||||||| |||    
T  54000199 aaaatcgaatcgtatttgtcatgacgagtaaattacactcagttcataaaaaaaaaatgtagattcatcgatatggttttttcttactatcaattaccat 54000100  T
Q  231 tttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcattagaac-aa 329  Q
    |||||||| ||||||||||||    |||||| | |||||||||||||| || | ||| |  ||||||| | |||| |||||| |||||| ||||  | ||    
T  54000099 tttcatctcaagaacatcaaaaaaattcatcacatttattcaacatgtgatctccatttacttcgttttaaaattaaatcttatttatctttagggctaa 54000000  T
Q  330 attacccctaatttatcaa 348  Q
    |||||| |||||| |||||    
T  53999999 attacctctaattcatcaa 53999981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 219 - 310
Target Start/End: Complemental strand, 20512891 - 20512800
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 310  Q
    ||||||| ||||||||||||||  |||||||||||||||||||| ||| ||| |||||||||| | ||| || ||||||||| ||| |||||    
T  20512891 atcaattgtcattttcatcttataaacatcaaacttcttcatcttcttcatttaacatgtaatctccatatccttcgtttcataatcgaatc 20512800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 11020144 - 11020059
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaatt 305  Q
    |||| |||||||||||||||||| || ||||||| | || |||||||||||| ||||||| || | |||||||||||||||| ||||    
T  11020144 atcagttatcattttcatcttaaaaatatcaaacctttt-atctcctttatttaacatgtgatttgcatctctttcgtttcaaaatt 11020059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 4115452 - 4115389
Alignment:
Q  214 ttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 277  Q
    ||||||| ||||| |||||| ||||||||||||| |||||||| |||||| || ||||||||||    
T  4115452 ttactattaattaccatttttatcttaagaacatgaaacttctccatctcattcattcaacatg 4115389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 25062340 - 25062401
Alignment:
Q  229 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctc 290  Q
    ||||| ||||| |||||||||||||||||||||| ||| ||| ||||||| || ||||||||    
T  25062340 atttttatcttcagaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctc 25062401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 55897600 - 55897693
Alignment:
Q  90 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 183  Q
    ||||||| |||||| ||||| |||| | |||||||||||||||||||||  |||  ||||||| ||||  |||||| || || |||||||||||    
T  55897600 ttatcttattcattcaacatatgatcttcatctcttttcgttccaaaattaaattctacttgttattaagggtaaactatcctcaattcatcaa 55897693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 54000275 - 54000233
Alignment:
Q  224 ttatcattttcatcttaagaacatcaaacttcttcatctcctt 266  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||    
T  54000275 ttatcatttttatcttaaaaacatcaaacttctttatctcctt 54000233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 22050903 - 22050995
Alignment:
Q  92 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 185  Q
    |||| ||||||| |||||||||| | |||||| || | ||| | ||||||||| || || ||||||  ||||||||||||||||||||| ||||    
T  22050903 atctccttcattcaacatgtgatcttcatctcattcctttc-agaatcgaatcatatttatcattaagggtaaattacccccaattcataaagg 22050995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 46431204 - 46431144
Alignment:
Q  229 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatct 289  Q
    ||||| |||| || |||||||||||||||||||| |||  ||||||| ||||| |||||||    
T  46431204 atttttatctcaataacatcaaacttcttcatcttcttagttcaacacgtaatcttcatct 46431144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 289
Target Start/End: Original strand, 10775163 - 10775244
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatct 289  Q
    |||||||||  |||||||| |||||||||||||||||||||||||||||||||||| ||  |||||||| |||| |||||||    
T  10775163 tttttcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctctttcgttcaacatctaattttcatct 10775244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 46080971 - 46081044
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaat 281  Q
    |||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||| | ||||||||||||    
T  46080971 tttttcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctccttcactcaacatgtaat 46081044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 7104297 - 7104367
Alignment:
Q  240 aagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 310  Q
    ||||| || ||| |||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||    
T  7104297 aagaatattaaatttcttcatctccttcattcaacatgtaatattcatctctttcgtttcagaatcgaatc 7104367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 161 - 278
Target Start/End: Complemental strand, 7997314 - 7997194
Alignment:
Q  161 gtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttctt 257  Q
    |||||||||||| ||||||||||| |||||||||   |||||||||    ||||||||| ||||||||| |||||||||||  | || ||| ||||||||    
T  7997314 gtaaattaccccaaattcatcaagaaaaaatgtagattcatcgatatgattttttcttagtatcaattaccattttcatctctataatatctaacttctt 7997215  T
Q  258 catctcctttattcaacatgt 278  Q
    ||| || || |||||||||||    
T  7997214 catttctttcattcaacatgt 7997194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 34601516 - 34601446
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    |||||| ||| ||||||||  | ||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  34601516 tttttcctacaatcaattacaacttttatcttaagaacatcaaacttcctcatctcctttattcaacatgt 34601446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 211 - 325
Target Start/End: Original strand, 52432836 - 52432950
Alignment:
Q  211 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 310  Q
    ||||||| || | ||||||||||| ||| || |||||||||||||||||| | ||| |||| ||||||||| || ||||||||||||||| |||  ||||    
T  52432836 ttcttacaattagttatcattttcttctcaaaaacatcaaacttcttcattttcttcattcgacatgtaatttttatctctttcgtttcataatcaaatc 52432935  T
Q  311 ttttttatcattaga 325  Q
     | ||| ||||||||    
T  52432936 atatttgtcattaga 52432950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 7104215 - 7104271
Alignment:
Q  253 ttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaat 309  Q
    |||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||    
T  7104215 ttcttcatctccttcatgcaacatgtaatattcatctctttcgtttcagaatcgaat 7104271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 323
Target Start/End: Original strand, 3367806 - 3367897
Alignment:
Q  232 ttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcatta 323  Q
    ||||||| |||||||||||| || |||||||| || ||||||||||| || | ||||||||||||| |||||||  ||| | ||||||||||    
T  3367806 ttcatctcaagaacatcaaattttttcatctcattcattcaacatgtgatctccatctctttcgttccagaattatatcatatttatcatta 3367897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 44342145 - 44342055
Alignment:
Q  171 cccaattcatcaaggaaaaatgtatgctcatcgata---gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 260  Q
    |||||||||||||||||||||||| ||||| |||||    |||||||||||||| |||| ||||||||| | || ||||||||||||||||||    
T  44342145 cccaattcatcaaggaaaaatgtaggctcaccgatatagttttttcttactatc-attaccattttcatatcaa-aacatcaaacttcttcat 44342055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 3232179 - 3232271
Alignment:
Q  92 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 185  Q
    |||||||||||| ||||||| || | ||||||||| | ||| |  |||||||| ||||| |||||||||||||||| |||| ||||||||||||    
T  3232179 atcttcttcattcaacatgtaatctccatctctttac-ttctagtatcgaatcatacttatcattagaggtaaattgcccctaattcatcaagg 3232271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 7104316 - 7104400
Alignment:
Q  92 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaatt 177  Q
    |||| ||||||| ||||||| || | ||||||||| |||| || ||||||||| |||||||||||||| |||| ||||||||||||    
T  7104316 atctccttcattcaacatgtaatattcatctcttt-cgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 7104400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 291
Target Start/End: Original strand, 12144970 - 12145050
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctct 291  Q
    |||||||||| ||||||||||||||| |||| || |   ||||||||||||||||| || ||||||||||| || |||||||||    
T  12144970 tttttcttacaatcaattatcatttttatctcaata---tcaaacttcttcatctcattcattcaacatgtgattttcatctct 12145050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 15321060 - 15321137
Alignment:
Q  227 tcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaat 304  Q
    |||||||| ||| || ||||| ||| || ||||| ||||| |||||||||||||| |||||||||||| |||||||||    
T  15321060 tcattttcttctcaaaaacattaaattttttcatatccttcattcaacatgtaatcttcatctctttcatttcagaat 15321137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 42819621 - 42819674
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatc 261  Q
    |||||||||| |||||||||||||||||||| |||||||| |||||| ||||||    
T  42819621 tttttcttacaatcaattatcattttcatctcaagaacataaaacttattcatc 42819674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 52432672 - 52432728
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaaca 275  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||| ||| ||||    
T  52432672 atcaattaccattttcatctcaagaacattaaacttcttcatctccttcatttaaca 52432728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 348
Target Start/End: Complemental strand, 34601681 - 34601544
Alignment:
Q  211 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 310  Q
    ||||||| || | |||| |||||||||| || |||||||||| | ||||||| ||| ||||||||||| || |||||||| ||| ||  | ||| |||||    
T  34601681 ttcttacgattagttattattttcatctcaaaaacatcaaacgttttcatctactt-attcaacatgtgatattcatctccttccttataaaatcgaatc 34601583  T
Q  311 ttttttatcattaga-acaaattacccctaatttatcaa 348  Q
     |  || |||||||| |||||||||| ||||||||||||    
T  34601582 atagttgtcattagagacaaattacctctaatttatcaa 34601544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 170
Target Start/End: Original strand, 49897909 - 49897998
Alignment:
Q  81 tcgaacttcttat-cttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacc 170  Q
    ||||||||||| | || ||||||| |||||||||| | |||||| ||| |||| | ||||||||| || ||||||||||||||||||||||    
T  49897909 tcgaacttcttcttctccttcattcaacatgtgatctccatctccttt-gttctagaatcgaatcataattgtcattagaggtaaattacc 49897998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 67982 - 68054
Alignment:
Q  97 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacc 170  Q
    |||||||  ||||||||| | ||||||||| | ||||||||||| ||| || ||||||||||||||||||||||    
T  67982 cttcattctacatgtgatcttcatctcttt-cattccaaaatcggatcataattgtcattagaggtaaattacc 68054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 208 - 297
Target Start/End: Original strand, 68097 - 68186
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 297  Q
    |||||||||| || | ||| |||||| || | ||||||||| ||||||||||||||||| ||| ||||||| || | ||||| |||||||    
T  68097 tttttcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatctttttcgtt 68186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 68139 - 68198
Alignment:
Q  84 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaat 143  Q
    |||||||| |||| |||||||||||||||||| | ||||| ||||||||||||||||||||    
T  68139 aacttcttcatctccttcatttaacatgtgatctccatct-ttttcgttccaaaatcgaat 68198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 3231979 - 3232047
Alignment:
Q  229 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 297  Q
    |||||||||| ||||||| ||||||||||||| || || ||||||||||| || |||| ||| ||||||    
T  3231979 attttcatctcaagaacaacaaacttcttcatgtcattcattcaacatgtgatattcacctccttcgtt 3232047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 49897870 - 49897940
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    |||||||||| || ||||| |||||| | || |||||| || ||||||||| ||||||| |||||||||||    
T  49897870 tttttcttacgattaattaccatttttagctcaagaacgtcgaacttcttcttctccttcattcaacatgt 49897940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 38839715 - 38839666
Alignment:
Q  229 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    |||||||||| ||||||||||||| ||||||||| ||| |||| ||||||    
T  38839715 attttcatctcaagaacatcaaacctcttcatcttcttcattcgacatgt 38839666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 10775028 - 10775096
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcat 287  Q
    ||||| ||||||||||||||  ||||||||||| |||||| |||  || ||||||||||| || |||||    
T  10775028 atcaaatatcattttcatctccagaacatcaaatttcttcgtctgtttcattcaacatgtgatcttcat 10775096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 126 - 323
Target Start/End: Original strand, 20068000 - 20068200
Alignment:
Q  126 ttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-ctcatcgatag---tttttcttactatc 221  Q
    ||||||||| ||||||||| |||||||| |||  |||||||||||  ||||||||||| | |||||||| | |||||| ||||   |||||||||| |||    
T  20068000 ttcgttccataatcgaatcctacttgtctttaagggtaaattaccttcaattcatcaaaggaaaatgtaagcctcatccatagtgctttttcttacaatc 20068099  T
Q  222 aattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcat 321  Q
     | || ||||||||| |  ||||||||||||||| ||||||| || ||||||||||| || || ||||  |||  ||||||||  ||||||  |||||||    
T  20068100 -agtaccattttcatgtagagaacatcaaacttcctcatctctttcattcaacatgtcatctttatcttcttcagttcagaataaaatcttacttatcat 20068198  T
Q  322 ta 323  Q
    ||    
T  20068199 ta 20068200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 32342600 - 32342669
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 277  Q
    |||||||||| |||||||||||||||||||| || |||||||||||| |||||||| || ||||||||||    
T  32342600 tttttcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacatg 32342669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 309
Target Start/End: Original strand, 23577118 - 23577252
Alignment:
Q  177 tcatcaaggaaaaatgtatgctcatcgata--gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaac 274  Q
    |||| ||||||||||||| |||||  ||||  |||||||||| || || ||| ||||||||||| || ||||||| |||||| ||||||||| |||||||    
T  23577118 tcatgaaggaaaaatgtaggctcaatgatatggtttttcttagtaacagttaccattttcatctcaaaaacatcatacttctccatctccttcattcaac 23577217  T
Q  275 atgtaatgttcatctctttcgtttcagaattgaat 309  Q
    || | || | ||| |  ||||||||| ||||||||    
T  23577218 atctgatatacatttacttcgtttcaaaattgaat 23577252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 32047194 - 32047291
Alignment:
Q  228 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcattaga 325  Q
    ||||||||||| |||||||||||||||||||||||| || ||||||||| | || ||| |||  ||| || || ||||||||| |  |||||||||||    
T  32047194 cattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgatattcgtcttcttcattccataattgaatcctacttatcattaga 32047291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 20206527 - 20206481
Alignment:
Q  211 ttcttactatcaattatcattttcatcttaagaacatcaaacttctt 257  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||    
T  20206527 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 20206481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 22100550 - 22100504
Alignment:
Q  211 ttcttactatcaattatcattttcatcttaagaacatcaaacttctt 257  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||    
T  22100550 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 22100504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 293
Target Start/End: Original strand, 23577009 - 23577093
Alignment:
Q  209 ttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctcttt 293  Q
    |||| |||| |||||||||||||||||| |||| ||||| ||| ||||| ||||| |||||| || |||| || | |||||||||    
T  23577009 tttttttacaatcaattatcattttcattttaaaaacataaaatttctttatctcttttatttaagatgttatttacatctcttt 23577093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 32047262 - 32047317
Alignment:
Q  130 ttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 185  Q
    ||||| ||| ||||| ||||| ||||||||||||||||| || |||||||||||||    
T  32047262 ttccataattgaatcctacttatcattagaggtaaattatcctcaattcatcaagg 32047317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 7716786 - 7716732
Alignment:
Q  250 aacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaat 304  Q
    ||||| ||||| ||||| |||||||||||||| |||||||| ||||||| |||||    
T  7716786 aactttttcatttccttcattcaacatgtaattttcatctcattcgttttagaat 7716732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 23577068 - 23577121
Alignment:
Q  101 atttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcat 155  Q
    |||||| |||| |||||||||||||||  |||||||||||||||||| |||||||    
T  23577068 atttaagatgttatttacatctctttta-ttccaaaatcgaatcgtatttgtcat 23577121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 26236797 - 26236751
Alignment:
Q  136 aatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 182  Q
    ||||||||| ||||| | |||||||||||||||||||||||| ||||    
T  26236797 aatcgaatcatacttattattagaggtaaattacccccaatttatca 26236751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 37033 - 36946
Alignment:
Q  224 ttatcattttcatcttaaga-acatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 310  Q
    |||||||||||||||||| | |||||||| ||||||||||| |||||||||||||| || |||||||| || |||||| ||| |||||    
T  37033 ttatcattttcatcttaaaacacatcaaatttcttcatctcgtttattcaacatgtgatcttcatctcatttgtttcataatcgaatc 36946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 794 - 853
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    |||| ||||||||||| | | ||| | ||||||||||||||||||||| |||||||||||    
T  794 atcatttatcattttcctttcaagtatatcaaacttcttcatctccttgattcaacatgt 853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 62791 - 62744
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctt 266  Q
    |||| |||||| ||||||||||| ||||||||||||||| ||||||||    
T  62791 atcagttatcaatttcatcttaaaaacatcaaacttctttatctcctt 62744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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