View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_high_70 (Length: 329)
Name: NF15962_high_70
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_70 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 313
Target Start/End: Complemental strand, 45043924 - 45043623
Alignment:
| Q |
13 |
atactttaccctgattaaaaccactcttttatcttcttgatcatatctaaagcacgattggtaaattttccttttcttatgcacaatttcaagcctgaat |
112 |
Q |
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| T |
45043924 |
atactttaccctgattaaaaccactcttttatcttcttgatcatatctaatgcacgattggtaaattttccttttcttatgcacaatttcaagcctaaag |
45043825 |
T |
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| Q |
113 |
ttgaagtaattctttggtaatcttagtttgagacttagaatttagaaagatagtgagtgcacagttctaacaactagattttttctttaacagaaaattg |
212 |
Q |
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| T |
45043824 |
ttgaagtacttctttggtaatcttagtttgagacttagaatttagaaagatagtgagtgtacagttctaacaactagattttttctttaacagaaaattg |
45043725 |
T |
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| Q |
213 |
tgctaaagttggagattcatgaagacaaaatcaaacaaaaagctatgaaggcagtctctggcctttcaggtaaagaacaaaaaa-tctattgatcatgta |
311 |
Q |
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| T |
45043724 |
tgctaaagttggagattcatgaagacaaaatcaaacaaaaagctatgaaggcagtctctggcctttccggtacagaaaaaaaaattctattgatcatata |
45043625 |
T |
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| Q |
312 |
cc |
313 |
Q |
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|| |
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| T |
45043624 |
cc |
45043623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 68 - 311
Target Start/End: Complemental strand, 46175974 - 46175731
Alignment:
| Q |
68 |
gattggtaaattttccttttcttatgcacaatttcaagcctgaatttgaagtaattctttggtaatcttagtttgagacttagaatttagaaagatagtg |
167 |
Q |
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| T |
46175974 |
gattggtaaattttccttttcttatgcacaatttcaagcctgaatttgaagtacttctttggtaatcttagtttgagacttagaatttagaaagatagtg |
46175875 |
T |
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| Q |
168 |
agtgcacagttctaacaactagattttttctttaacagaaaattgtgctaaagttggagattcatgaagacaaaatcaaacaaaaagctatgaaggcagt |
267 |
Q |
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| T |
46175874 |
agtgttcagttctaacaactatattttttctttgacagaaaattgtgctaaagttggagattcatgaagacaaaattaaacaaaaagctatgaaggcagt |
46175775 |
T |
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| Q |
268 |
ctctggcctttcaggtaaagaacaaaaaatctattgatcatgta |
311 |
Q |
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| T |
46175774 |
ctctggcctctcaggtaaagaaaaaaaattccattgattatgta |
46175731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 45036375 - 45036293
Alignment:
| Q |
202 |
acagaaaattgtgctaaagttggagattcatgaagacaaaatcaaacaaaaagctatgaaggcagtctctggcctttcaggta |
284 |
Q |
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| T |
45036375 |
acagaaagttgtgttaaagttggaaataaatgaagacaaaatcaagcaaaaagctatgaaagcagtctctggcctttcaggta |
45036293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 45041661 - 45041579
Alignment:
| Q |
202 |
acagaaaattgtgctaaagttggagattcatgaagacaaaatcaaacaaaaagctatgaaggcagtctctggcctttcaggta |
284 |
Q |
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| T |
45041661 |
acagaaagttgtgttaaagttggaaataaatgaagatagaatcaagcaaaaggctatgaaggcagtctctggcctttcaggta |
45041579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 45041930 - 45041819
Alignment:
| Q |
34 |
cactcttttatcttcttgatcatatctaaagcacgattggtaaattttccttttcttatgcacaatttcaagcctgaatttgaagtaattctttggtaat |
133 |
Q |
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| T |
45041930 |
cactcttttattttctttaccattgctaaagtatgtttgatgaattttccttatcttatgtaaaatttcaaggctgaattttaagtacttatttggtagt |
45041831 |
T |
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| Q |
134 |
cttagtttgaga |
145 |
Q |
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|||| ||||||| |
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| T |
45041830 |
cttaatttgaga |
45041819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 45036525 - 45036457
Alignment:
| Q |
13 |
atactttaccctgattaaaaccactcttttatcttcttgatcatatctaaagcacgattggtaaattttc |
82 |
Q |
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|||||||||| | |||||||||||| |||||||| ||| |||||| |||||| | ||||||| ||||||| |
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| T |
45036525 |
atactttaccttcattaaaaccact-ttttatctccttcatcatagctaaagtatgattggtgaattttc |
45036457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 17862146 - 17862091
Alignment:
| Q |
230 |
catgaagacaaaatcaaacaaaaagctatgaaggcagtctctggcctttcaggtaa |
285 |
Q |
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| T |
17862146 |
catgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggtaa |
17862091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 17872720 - 17872666
Alignment:
| Q |
231 |
atgaagacaaaatcaaacaaaaagctatgaaggcagtctctggcctttcaggtaa |
285 |
Q |
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|||| |||| || ||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
17872720 |
atgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggtaa |
17872666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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