View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_high_71 (Length: 326)

Name: NF15962_high_71
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_high_71
NF15962_high_71
[»] chr8 (1 HSPs)
chr8 (23-310)||(45198837-45199124)


Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 23 - 310
Target Start/End: Complemental strand, 45199124 - 45198837
Alignment:
Q  23 aaggtgagtgaatcagatagctcctccactctttctcctgatggaggactgccaggactctgctgcctattagaagaaactgaatgcaaccaatttgaaa 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45199124 aaggtgagtgaatcagatagctcctccactctttctcctgatggaggactgccaggactctgcttcctattagaagaaactgaatgcaaccaatttgaaa 45199025  T
Q  123 gcttgtttctggtagtaggagatgaagatgaaccatcattggacttgttactcctttcagcttgtgcatcttctgattgattattagacattatatgaag 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45199024 gcttgtttctggtagtaggagatgaagatgaaccatcattggacttgttactcctttcagcttgtgcatcttctgattgattattagacattatatgaag 45198925  T
Q  223 cttcttaagaatgttcttcataacttttcaccttattattacagtactgaatgttaaagaagtgtaaacctctccatagtgtagttag 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45198924 cttcttaagaatgttcttcataacttttcaccttattattacagtactgaatgttaaagaagtgtaaacctctccatagtgtagttag 45198837  T

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