View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_high_74 (Length: 313)
Name: NF15962_high_74
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_74 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 286
Target Start/End: Original strand, 23251187 - 23251453
Alignment:
| Q |
20 |
cgcatcacaatccttgatatgacggtgaaatgcggcgaatgcaccccaattgaagtcacagcccagatcgtcgtagtagaccnnnnnnnaaagtcctaca |
119 |
Q |
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| T |
23251187 |
cgcatcacaatccttgatatgacggtgaaatgcagcgaatgcaccccaattgaagtcacagcccagatcgtcgtaacagacctttttttaaagtcctaca |
23251286 |
T |
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| Q |
120 |
aaagagaagagaagaataagacaagagacaccgtattacctccttcaacttaatacaggctaagcaaagatggcaatagattatattttctatatcaata |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23251287 |
aaagagaagagaagaataagacaagagacaccgtattaccttcttcaacttaatacaggctaagcaaagatggcaatagattatattttctatatcaata |
23251386 |
T |
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| Q |
220 |
gctgaaattccaaaattatattttctttcatatataataaaaaggatgagatgcactttacgcttga |
286 |
Q |
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| T |
23251387 |
gctgaaattccaaaattatattttctttcatatataataaaaaggatgagatgcactttacgcttga |
23251453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 109 - 261
Target Start/End: Original strand, 23265846 - 23266001
Alignment:
| Q |
109 |
aaagtcctacaaaagagaagagaagaataagacaagagacaccgtattacctccttcaactta--atacaggctaagcaaagatggcaatagattatatt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| || || ||||||||| ||||||||||||||||||| |
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| T |
23265846 |
aaagtcctacaaaagagaagagaagaataagacaagagacgctatattacctctttcaacttataatgcaagctaagcaaggatggcaatagattatatt |
23265945 |
T |
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| Q |
207 |
ttctatatcaatagctgaaattccaaaattatatt-ttctttcatatataataaaa |
261 |
Q |
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| T |
23265946 |
ttctatatcaaaagctgaaattccaaagttatattcttctttcatatataataaaa |
23266001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 23257236 - 23257356
Alignment:
| Q |
23 |
atcacaatccttgatatgacggtgaaatgcggcgaatgcaccccaattgaagtcacagcccagatcgtcgtagtagaccnnnnnnnaaagtcctacaaaa |
122 |
Q |
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||||||||||||||||| ||||||||||| |||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||| |
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| T |
23257236 |
atcacaatccttgatattacggtgaaatgtggcgtatgcaccccaattgcagtcacagcccagatcgtcgtaacagacttttttttaaagtcctacaaaa |
23257335 |
T |
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| Q |
123 |
gagaagagaagaataagacaaga |
145 |
Q |
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|||| |||| |||||||||||| |
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| T |
23257336 |
gaga--agaaaaataagacaaga |
23257356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 171
Target Start/End: Original strand, 23246770 - 23246898
Alignment:
| Q |
43 |
ggtgaaatgcggcgaatgcaccccaattgaagtcacagcccagatcgtcgtagtagaccnnnnnnnaaagtcctacaaaagagaagagaagaataagaca |
142 |
Q |
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||||||||||||||||||||||||| ||| |||||||| |||| | || ||| |||| ||||||||||||||||||||||| | ||||||| |
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| T |
23246770 |
ggtgaaatgcggcgaatgcaccccagttgcagtcacagtccaggtagtggtaacagactttttttttaagtcctacaaaagagaagagaaaattaagaca |
23246869 |
T |
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| Q |
143 |
agagacaccgtattacctccttcaactta |
171 |
Q |
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||| |||| | ||||||||| ||||||| |
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| T |
23246870 |
agatacactattttacctcctacaactta |
23246898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 23246979 - 23247032
Alignment:
| Q |
224 |
aaattccaaaattatatt-ttctttcatatataataaaaaggatgagatgcact |
276 |
Q |
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|||||||||||||||||| || ||||||||||||||||| |||||||||||| |
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| T |
23246979 |
aaattccaaaattatattcttttttcatatataataaaagtcatgagatgcact |
23247032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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