View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_high_87 (Length: 294)

Name: NF15962_high_87
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_high_87
NF15962_high_87
[»] chr5 (2 HSPs)
chr5 (110-148)||(38685296-38685334)
chr5 (115-148)||(10948766-10948799)
[»] chr4 (1 HSPs)
chr4 (103-143)||(18814805-18814845)
[»] chr6 (1 HSPs)
chr6 (105-142)||(24105283-24105320)
[»] chr3 (1 HSPs)
chr3 (109-146)||(2304055-2304092)


Alignment Details
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 38685296 - 38685334
Alignment:
Q  110 catgacactgacacatgtggttatattcaattacttcca 148  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  38685296 catgacactgacacatgtggttacattcaattacttcca 38685334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 10948766 - 10948799
Alignment:
Q  115 cactgacacatgtggttatattcaattacttcca 148  Q
    |||| |||||||||||||||||||||||||||||    
T  10948766 cactaacacatgtggttatattcaattacttcca 10948799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 18814805 - 18814845
Alignment:
Q  103 acaccaacatgacactgacacatgtggttatattcaattac 143  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  18814805 acaccaacacgacactaacacatgtggttatattcaattac 18814845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 24105283 - 24105320
Alignment:
Q  105 accaacatgacactgacacatgtggttatattcaatta 142  Q
    ||||||||||||||||||||| || |||||||||||||    
T  24105283 accaacatgacactgacacatttgattatattcaatta 24105320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 2304055 - 2304092
Alignment:
Q  109 acatgacactgacacatgtggttatattcaattacttc 146  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  2304055 acatgatactgacacatgtggttatgttcaattacttc 2304092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University