View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_high_9 (Length: 506)

Name: NF15962_high_9
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_high_9
NF15962_high_9
[»] chr5 (1 HSPs)
chr5 (21-494)||(29505542-29506015)
[»] chr1 (10 HSPs)
chr1 (123-490)||(44783806-44784178)
chr1 (279-477)||(44614296-44614497)
chr1 (274-489)||(35900722-35900937)
chr1 (275-469)||(17809936-17810130)
chr1 (387-477)||(44146604-44146694)
chr1 (118-374)||(11542609-11542862)
chr1 (20-117)||(44614594-44614692)
chr1 (20-117)||(44793877-44793975)
chr1 (416-477)||(11542858-11542919)
chr1 (25-117)||(11542496-11542591)
[»] scaffold0017 (3 HSPs)
scaffold0017 (274-477)||(182255-182458)
scaffold0017 (277-471)||(171174-171368)
scaffold0017 (20-119)||(171523-171623)
[»] scaffold0061 (2 HSPs)
scaffold0061 (277-471)||(27424-27618)
scaffold0061 (20-119)||(27169-27269)
[»] chr3 (1 HSPs)
chr3 (212-476)||(26729914-26730179)
[»] chr2 (4 HSPs)
chr2 (374-489)||(29227245-29227360)
chr2 (374-489)||(29340544-29340659)
chr2 (274-366)||(29218241-29218333)
chr2 (274-366)||(29331540-29331632)


Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 21 - 494
Target Start/End: Original strand, 29505542 - 29506015
Alignment:
Q  21 tatattatgagattgatactgtctttgatgacagatt-ttgaacatagagaaatgcaatacaaattgtagaaaacctttagttacacatatatcaacagt 119  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  29505542 tatattatgagattgatactgtctttgatgacagattattgaacattgagaaatgcaatacaaattgtagaaaatgtttagttacacatatatcaacagt 29505641  T
Q  120 cacatggttaatgaatttcagcagttaataaagcaaccatcccaaggctaaaagttttcatgattcggttaaaccataaaagtggaagtaacaaagtagg 219  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||||  |||||||||||||||||||| ||||||||||||||||| || |||| |||||||    
T  29505642 cacatggttaacgaattacagcagttaataaagcaactatcccattgctaaaagttttcatgattcagttaaaccataaaagtgaaactaactaagtagg 29505741  T
Q  220 aaagaacagaagtacctggcttagcattcatccagtttagagcaactagacatgcattcactgcttccaccacaagaacactttcaatatcaaagcattc 319  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  29505742 aaagaacagaagtacctg-cttagcattcatccagtttagaacaactagacatgtattcactgcttccaccacatgaacactttcaatatcaaagcattc 29505840  T
Q  320 aagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctataaagccaacaaaagtagtgaagaatcctagccccatgctcatgtata 419  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29505841 aagaatttggaataggtttctctccaagatggtaggaacaatattgaccctataaagccaacaaaagtagtgaagaatcctagccccatgctcatgtata 29505940  T
Q  420 atgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttgatgtttcggttgctcttcatctc 494  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||  ||||||| ||||    
T  29505941 atgcttccaaaaatattgaactgtaatctcctgcatcagttattggcacttgatgttttggcggctcttcttctc 29506015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 123 - 490
Target Start/End: Original strand, 44783806 - 44784178
Alignment:
Q  123 atggttaatgaatttcagcagttaataaagcaaccatcccaa-ggctaaaagttttcatgattcggttaaaccataaaagtggaagtaacaaagtaggaa 221  Q
    ||||| |||||||||||| ||||||||||||||| ||||||| |||||||||| || ||||||| |||||||||||||| |  || |   |||||| |||    
T  44783806 atggtaaatgaatttcagtagttaataaagcaactatcccaaaggctaaaagtatttatgattcagttaaaccataaaaatttaaatggaaaagtaagaa 44783905  T
Q  222 agaacagaagtacctggcttagcattcatccagtttagagcaactagacatg--cattca---ctgcttccaccacaagaacactttcaatatcaaagca 316  Q
    |||||||||||||||| |  | |||||||||| ||||||| | |||| || |  |||| |   |||||||||||| | ||  | | ||||||| |||| |    
T  44783906 agaacagaagtacctgacc-atcattcatccactttagagaacctagccaggtacattgattactgcttccaccagatgatgattctcaatattaaagta 44784004  T
Q  317 ttcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctataaagccaacaaaagtagtgaagaatcctagccccatgctcatgt 416  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||| |||| |||||||||| ||||||||||||||    
T  44784005 ttcaagaatttggagtaggtttctctccaagatggtagtaacaatattgagcctataaaaccaacgaaactagtaaagaatcctatccccatgctcatgt 44784104  T
Q  417 ataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttgatgtttcggttgctcttca 490  Q
    |||| ||||||||||||| ||||||||||||| | |||||| || |||||||||||||||| ||| ||||||||    
T  44784105 ataacgcttccaaaaatactgaattgtcatctccagcatcaattgttggcacttgatgttttggtggctcttca 44784178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 279 - 477
Target Start/End: Complemental strand, 44614497 - 44614296
Alignment:
Q  279 actgcttccaccacaagaacactttcaatatcaaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctataaagcc 378  Q
    ||||||||||||||| ||  ||||||||||||||||  ||||||||| ||||||| |||||||||||||||||||| ||||| ||||| || |  |||||    
T  44614497 actgcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtaagtttctctccaagatggtagtaacaacattgagccgaccaagcc 44614398  T
Q  379 aacaaaagtagtgaagaatcctagccccatgctcatgtataatgcttccaaaaatattgaatt---gtcatctactgcatcagttattggcacttgatgt 475  Q
    ||| |||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||    |||||| ||||||||||| ||||||||||||||    
T  44614397 aacgaaaccagtgaagaatcctatccccatgctcatgtataatgcttccaaaaatattgaattatcatcatctcctgcatcagttgttggcacttgatgt 44614298  T
Q  476 tt 477  Q
    ||    
T  44614297 tt 44614296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 274 - 489
Target Start/End: Complemental strand, 35900937 - 35900722
Alignment:
Q  274 cattcactgcttccaccacaagaacactttcaatatcaaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctata 373  Q
    |||| ||||||||| ||||||||| | |||||||||||| |  ||||||||||||||| | |||||||||||||||||||| || |||||||| |||       
T  35900937 catttactgcttcctccacaagaagattttcaatatcaatgtgttcaagaatttggagcaagtttctctccaagatggtagtaaaaatattgagcctgcc 35900838  T
Q  374 aagccaacaaaagtagtgaagaatcctagccccatgctcatgtataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttgat 473  Q
    |||||||| ||   | |||||||||||| ||||   ||||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||    
T  35900837 aagccaacgaagccaatgaagaatcctatccccccactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgat 35900738  T
Q  474 gtttcggttgctcttc 489  Q
     ||||||| |||||||    
T  35900737 atttcggtggctcttc 35900722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 275 - 469
Target Start/End: Original strand, 17809936 - 17810130
Alignment:
Q  275 attcactgcttccaccacaagaacactttcaatatcaaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctataa 374  Q
    ||||||||||||||||||  ||| ||||||||||||||||  ||||||||| ||||||| || ||||||||||| ||||| ||||||||||| ||||  |    
T  17809936 attcactgcttccaccacgtgaagactttcaatatcaaagtgttcaagaatctggagtaagtatctctccaagacggtagtaacaatattgagcctacca 17810035  T
Q  375 agccaacaaaagtagtgaagaatcctagccccatgctcatgtataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcact 469  Q
    ||||||| |||  ||| ||||| || |||||||||||||||||||||| ||| ||||| ||||| || |||||| ||||||  ||| ||||||||    
T  17810036 agccaacgaaaccagtaaagaacccaagccccatgctcatgtataatgtttctaaaaacattgagttctcatctcctgcatttgttgttggcact 17810130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 387 - 477
Target Start/End: Complemental strand, 44146694 - 44146604
Alignment:
Q  387 tagtgaagaatcctagccccatgctcatgtataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttgatgttt 477  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||  | ||||||||||||||    
T  44146694 tagtgaagaatcctatccccatgctcatgtagaatgcttctaaaaatattgaattgtcatctcctgcatcagtagtcggcacttgatgttt 44146604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 118 - 374
Target Start/End: Original strand, 11542609 - 11542862
Alignment:
Q  118 gtcacatggttaatgaatttcagcagttaataaagcaaccatcccaaggctaaaagttttcatgattcggttaaaccataaaagtggaagtaacaaagta 217  Q
    |||| ||| |||||||||||| | ||||||| ||||||| || |||||||||||||| |||||       ||||| ||||||| |  || || || ||||    
T  11542609 gtcatatgattaatgaatttcggtagttaattaagcaactataccaaggctaaaagtcttcat-------ttaaaacataaaaattaaaatagcagagta 11542701  T
Q  218 ggaaagaacagaagtacctggcttagcattcatccagtttagagcaactagacatg--catt---cactgcttccaccacaagaacactttcaatatcaa 312  Q
     ||||||||| ||||||||| || | |||||||  | |||||||||||||| || |  ||||   |||| |||||||||   ||| | | ||||||| ||    
T  11542702 agaaagaacaaaagtacctgcct-atcattcatggactttagagcaactagccaggtacattgatcactacttccaccatctgaagattctcaatattaa 11542800  T
Q  313 agcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctataa 374  Q
    ||||||||||||||||||||||||||||||||||||||| || ||| ||||||| |||||||    
T  11542801 agcattcaagaatttggagtaggtttctctccaagatggcagtaacgatattgagcctataa 11542862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 44614692 - 44614594
Alignment:
Q  20 atatattatgagattgatactgtctttgatgacagatt-ttgaacatagagaaatgcaatacaaattgtagaaaacctttagttacacatatatcaaca 117  Q
    ||||||||||||||||||| ||||||| |||  ||||| |||||||  ||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  44614692 atatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaaca 44614594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 44793877 - 44793975
Alignment:
Q  20 atatattatgagattgatactgtctttgatgacagatt-ttgaacatagagaaatgcaatacaaattgtagaaaacctttagttacacatatatcaaca 117  Q
    ||||||||||||||||||| ||||||| |||  ||||| |||||||  ||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  44793877 atatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaaca 44793975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 416 - 477
Target Start/End: Original strand, 11542858 - 11542919
Alignment:
Q  416 tataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttgatgttt 477  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||    
T  11542858 tataatgcttccaaaaatattgaattgtcatcttctgcatcagttgtcggcacttgatgttt 11542919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 11542496 - 11542591
Alignment:
Q  25 ttatgagattgatactgtctttgatgacagatt-ttgaacatagagaaatgcaatacaaattgtagaaaacctttagtt--acacatatatcaaca 117  Q
    ||||| |||||||| ||||||||||||||  || |||| ||  ||||||||||||||||||||| |||   ||||||||  |||||| ||||||||    
T  11542496 ttatgggattgatattgtctttgatgacatgttattgatcactgagaaatgcaatacaaattgttgaagtgctttagttacacacatgtatcaaca 11542591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 274 - 477
Target Start/End: Complemental strand, 182458 - 182255
Alignment:
Q  274 cattcactgcttccaccacaagaacactttcaatatcaaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctata 373  Q
    ||||||| |||||||||||| ||  ||||||||||||||||  ||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||      
T  182458 cattcacggcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtaagtttctctccaagatggtagtaacaatattgagcctacc 182359  T
Q  374 aagccaacaaaagtagtgaagaatcctagccccatgctcatgtataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttgat 473  Q
    |||||||  |||  |||||||||||||| |||||||||||| ||||||||||||||||||| |||||| |||||| ||||||| ||| ||||||||||||    
T  182358 aagccaatgaaaccagtgaagaatcctatccccatgctcatatataatgcttccaaaaatactgaattttcatctcctgcatccgttgttggcacttgat 182259  T
Q  474 gttt 477  Q
    ||||    
T  182258 gttt 182255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 277 - 471
Target Start/End: Complemental strand, 171368 - 171174
Alignment:
Q  277 tcactgcttccaccacaagaacactttcaatatcaaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctataaag 376  Q
    ||||| ||||||||||| ||| | | ||||||  |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||  ||     
T  171368 tcactacttccaccacatgaaaattctcaatagtaaagtattcaagaatttggagtaggtttctctccaagatggtagtaacaatattgagcctaccaaa 171269  T
Q  377 ccaacaaaagtagtgaagaatcctagccccatgctcatgtataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttg 471  Q
    ||||| |||  |||||||||||||| |||||||||||| ||||||||||| |||||||||||||| |||||| ||||||||||| ||||||||||    
T  171268 ccaacgaaaccagtgaagaatcctatccccatgctcatatataatgcttcaaaaaatattgaattttcatctcctgcatcagttgttggcacttg 171174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 171623 - 171523
Alignment:
Q  20 atatattatgagattgatactgtctttgatgacagatt-ttgaacatagagaaatgcaatacaaattgtagaaaacctttagttacacatatatcaacag 118  Q
    ||||||||| ||||||||| | |||||||||| ||||| || ||||  ||||||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  171623 atatattataagattgatattttctttgatgaaagattattaaacactgagaaatgcaatacaaattgtagaaatgctttagttacaaatatatcaacag 171524  T
Q  119 t 119  Q
    |    
T  171523 t 171523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 277 - 471
Target Start/End: Original strand, 27424 - 27618
Alignment:
Q  277 tcactgcttccaccacaagaacactttcaatatcaaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctataaag 376  Q
    ||||| ||||||||||| ||| | | ||||||  |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||  ||     
T  27424 tcactacttccaccacatgaaaattctcaatagtaaagtattcaagaatttggagtaggtttctctccaagatggtagtaacaatattgagcctaccaaa 27523  T
Q  377 ccaacaaaagtagtgaagaatcctagccccatgctcatgtataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttg 471  Q
    ||||| |||  |||||||||||||| |||||||||||| ||||||||||| |||||||||||||| |||||| ||||||||||| ||||||||||    
T  27524 ccaacgaaaccagtgaagaatcctatccccatgctcatatataatgcttcaaaaaatattgaattttcatctcctgcatcagttgttggcacttg 27618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 27169 - 27269
Alignment:
Q  20 atatattatgagattgatactgtctttgatgacagatt-ttgaacatagagaaatgcaatacaaattgtagaaaacctttagttacacatatatcaacag 118  Q
    ||||||||| ||||||||| | |||||||||| ||||| || ||||  ||||||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  27169 atatattataagattgatattttctttgatgaaagattattaaacactgagaaatgcaatacaaattgtagaaatgctttagttacaaatatatcaacag 27268  T
Q  119 t 119  Q
    |    
T  27269 t 27269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 212 - 476
Target Start/End: Complemental strand, 26730179 - 26729914
Alignment:
Q  212 aaagtaggaaagaacagaagtacctggcttagcattcatccagtttagagcaactagacatg--cattcactgcttccaccacaagaacactttcaatat 309  Q
    |||||| |||||| || ||||||||| || | |||||||||| ||| ||||||||||||| |  |||||||||||||||||||| |||  ||||||| ||    
T  26730179 aaagtaagaaagagcataagtacctg-ctcatcattcatccactttggagcaactagacaagttcattcactgcttccaccacatgaaggctttcaagat 26730081  T
Q  310 caaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctataaagccaacaaaagtagtgaagaatcctagccccatg 409  Q
    ||| |  ||||||||| ||||||| |||||||||||||| | ||  |||| |||||| ||||  |||||||| ||| ||||||||||||||| |||||||    
T  26730080 caaggtgttcaagaatctggagtaagtttctctccaagacgatattaacattattgagcctaccaagccaacgaaactagtgaagaatcctatccccatg 26729981  T
Q  410 ctcatgtataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttgatgtt 476  Q
    ||||||||||| |||||||||||||||||||| || | | ||| ||  ||| |||||||||||||||    
T  26729980 ctcatgtataaagcttccaaaaatattgaattctcgtttcctgaatttgttgttggcacttgatgtt 26729914  T

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Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 374 - 489
Target Start/End: Original strand, 29227245 - 29227360
Alignment:
Q  374 aagccaacaaaagtagtgaagaatcctagccccatgctcatgtataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttgat 473  Q
    |||||||| |||  |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |||||||| ||||||||||      
T  29227245 aagccaacgaaaccagtgaagaatcctagccccatgctcatgtagaatgcttccagaaatattgaattgtcatctcctacatcagttgttggcacttgtg 29227344  T
Q  474 gtttcggttgctcttc 489  Q
    |||| | |||||||||    
T  29227345 gttttgattgctcttc 29227360  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 374 - 489
Target Start/End: Original strand, 29340544 - 29340659
Alignment:
Q  374 aagccaacaaaagtagtgaagaatcctagccccatgctcatgtataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttgat 473  Q
    |||||||| |||  |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |||||||| ||||||||||      
T  29340544 aagccaacgaaaccagtgaagaatcctagccccatgctcatgtagaatgcttccagaaatattgaattgtcatctcctacatcagttgttggcacttgtg 29340643  T
Q  474 gtttcggttgctcttc 489  Q
    |||| | |||||||||    
T  29340644 gttttgattgctcttc 29340659  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 366
Target Start/End: Original strand, 29218241 - 29218333
Alignment:
Q  274 cattcactgcttccaccacaagaacactttcaatatcaaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattga 366  Q
    ||||||||||||||| |||| ||  | | ||||||| |  ||||||||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  29218241 cattcactgcttccagcacatgatgattctcaatattatcgcattcaagaatttggagtaggtttctttccaagacggtagtaacaatattga 29218333  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 366
Target Start/End: Original strand, 29331540 - 29331632
Alignment:
Q  274 cattcactgcttccaccacaagaacactttcaatatcaaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattga 366  Q
    ||||||||||||||| |||| ||  | | ||||||| |  ||||||||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  29331540 cattcactgcttccagcacatgatgattctcaatattatcgcattcaagaatttggagtaggtttctttccaagacggtagtaacaatattga 29331632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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