View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15962_high_99 (Length: 263)
Name: NF15962_high_99
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_high_99 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 14168832 - 14168584
Alignment:
| Q |
1 |
aaggtactgccaaaattgcctttgaaaatgaatccgtttgctcaacatgaaaaggaaaaagaatcaatgtgataaattattgttcaaatataagtcttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14168832 |
aaggtactgccaaaattgcctttgaaattgaatccgtttgctcaacatgaaaaggaaaaagaatcaatgtgataaattattgtacaaatataagtcttga |
14168733 |
T |
|
| Q |
101 |
atgagatttccaatgca-tgaattggaccatagtgat--aaaaaagttaatttagagcatatatagaattttcaatctttatcactttctcaaaataatt |
197 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14168732 |
atgagatttccaatgcattgaattggaccatagtgataaaaaaaagttaatttagagcatatatagaattttcaatctttatcactttctcaaaataatt |
14168633 |
T |
|
| Q |
198 |
gcacaattctatcatgagaaaagtttacgtgagttgagttccgatttca |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14168632 |
gcacaattctatcatgagaaaagtttacgtgagttgagtcccgatttca |
14168584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University