View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_101 (Length: 275)
Name: NF15962_low_101
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_101 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 3085082 - 3084833
Alignment:
| Q |
18 |
tttctgatgaatgaattcataatgcctagcatatatata----attctgtgcaattttgtttttggatgttttatttacttgtttaaattgtggaggcga |
113 |
Q |
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| T |
3085082 |
tttctgatgaatgaattcataatgcctagcatatatatatataattctgtgcaattttgtttttggatgttctatgtacttagttaaattgtggatgcga |
3084983 |
T |
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| Q |
114 |
atttgtggataatttcgtttatgctatttagaagctggtgttcaatataattaagtagatttgtattcaatcttattgtctgctcaatgccataggtaat |
213 |
Q |
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| T |
3084982 |
atttgtggataatttcgtttatgctatttagatgctggtgttcaatataattaagtagatttgtat--catcttattgtctgctcaatgccataggtaat |
3084885 |
T |
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| Q |
214 |
gaaattatcaatcaatttaatggttatcattcctggcatgtatatatccttt |
265 |
Q |
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| T |
3084884 |
gaaattatcaatcaatttaatggttatcatccctggcatgtatatatccttt |
3084833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 3253780 - 3253845
Alignment:
| Q |
183 |
atcttattgtctgctcaatgccataggtaatgaaattatcaatcaatttaatggttatcattcctg |
248 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
3253780 |
atcttattgtctgctgaatggcataggtaatgaaattatcaatcaatttaatagttatcatccctg |
3253845 |
T |
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