View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_105 (Length: 266)
Name: NF15962_low_105
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_105 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 12656586 - 12656347
Alignment:
| Q |
13 |
taggtgatgaattttgtgatgtatagggcaaaagagtgtgacacgcggcataaattcttccaggtaaattaactcaccgagaaccgtccaaacccatcac |
112 |
Q |
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| T |
12656586 |
taggtgatgaattttgtgatgtttagggcaaaagagtgtgacacgcggcatgaattcttccaggtaaattaactcaccgagaaccgtccaaacccatcac |
12656487 |
T |
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| Q |
113 |
agcccttgtgaagtgtactcctcttgctagctagaacattcatttcctttgacaaatcatctaataac--nnnnnnnnnaccgggtaatctattaagtag |
210 |
Q |
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| T |
12656486 |
tgcccttgcgaagtgtactcctcttgctagctagaacattcatttcctttgacaaatcatctaataactttttttttttaccaggtaatctattaggtag |
12656387 |
T |
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| Q |
211 |
aattcactttttcttaaagatgaataaatgagatatttag |
250 |
Q |
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| T |
12656386 |
aattcactttttttttaagatgaataaatgaggtatttag |
12656347 |
T |
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