View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_106 (Length: 263)
Name: NF15962_low_106
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_106 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 47579935 - 47580186
Alignment:
| Q |
1 |
tggacttggtctctatcatcttggttttcctatggtataaattcctacttatgcaacttttcattcaaagggcttaaactcttgtatccatgttaaattt |
100 |
Q |
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| T |
47579935 |
tggacttggtctctatcatcttggttttcctatggtataaattcctacttatgcaacttttcattcaaagggcttgcactcttgtatccatgttaaattt |
47580034 |
T |
|
| Q |
101 |
ttcatgcaattcagcttctataagtttaggacttgaggatatataggattatattgtatgattcttcccctttaatttttccaatcactgttgcagctgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47580035 |
ttcatgcaattcagcttctataagtttaggacttgaggatatataggattatattgtatgattcttcccctttaatttttccaatcactgttgcagctgg |
47580134 |
T |
|
| Q |
201 |
caacttgtattgaagttgggcttccggcacttattgctatggttttcatctc |
252 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47580135 |
caacttgtattgaagttgggcttccggcacttattgttatggttttcatctc |
47580186 |
T |
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