View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_11 (Length: 505)
Name: NF15962_low_11
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_11 |
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| [»] scaffold0264 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 15 - 492
Target Start/End: Complemental strand, 39140976 - 39140497
Alignment:
| Q |
15 |
atgaaaatgatgaaacctttacta--gtgtttgaattatgtgaatgtagtaatgaagctcactaaatatttttcgcagtgatggttcctttattattata |
112 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39140976 |
atgaaaatgatgaaacctttactatagtgtttgaattatgtgaatgtagtaatgaagctctctaaatatttttcgcagtgatggttcctttattattata |
39140877 |
T |
|
| Q |
113 |
ctgatggtgctcttcaccactggaggtggagcaaagaaattgcggagccgcataccagttcaaaattaatcgctcagagagtgagcgatgaaataaatga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39140876 |
ctgatggtgctcttcaccactggaggtggagcaaagaaattgcggagccgcataccagttcaaaattaatcgctcagagagtgagcgatgaaataaatga |
39140777 |
T |
|
| Q |
213 |
tttaggataaagagttttctaaaaaggcgacaccgctacagagttgcaaagaaaaaagaagagaagttatatatctcaaattgcagctagctacaagaaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39140776 |
tttaggataaagagttttctaaaaaggcgacaccgctacagagttgcaaagaaaaaagaagagaagttatatatctcaaattgcagctagctacaagaaa |
39140677 |
T |
|
| Q |
313 |
tttgtcattttgcgatacttactttgcaacccttgacttagaactgtcgcagattacacttttacgactgttgttgcaactgttaggcttaagggtcgca |
412 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39140676 |
tttgtcattttgcgacacttactttgcaacccttgacttagaactgtcgcagattacactttaacgactgttgttgcaactgttaggcttaagggtcgca |
39140577 |
T |
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| Q |
413 |
ggttttacaaccttttttaagcaccctttcacaataaaacttttggccaaatattttcacactcccgttagtgctgatga |
492 |
Q |
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| T |
39140576 |
ggttttacaaccttttttaagcaccctttcacaataaaacttttggccaaatattttcacactcccgctagtgctaatga |
39140497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 384
Target Start/End: Complemental strand, 30054297 - 30054220
Alignment:
| Q |
307 |
aagaaatttgtcattttgcgatacttactttgcaacccttgacttagaactgtcgcagattacacttttacgactgtt |
384 |
Q |
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||||||||||||||||||||| | || |||||| ||||||| |||||||||||| || || |||||||| |||||||| |
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| T |
30054297 |
aagaaatttgtcattttgcgacatttgctttgcgacccttggcttagaactgtcacaaatcacacttttgcgactgtt |
30054220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 384
Target Start/End: Complemental strand, 30145340 - 30145263
Alignment:
| Q |
307 |
aagaaatttgtcattttgcgatacttactttgcaacccttgacttagaactgtcgcagattacacttttacgactgtt |
384 |
Q |
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| T |
30145340 |
aagaaatttgtcattttgcgacatttgctttgcgacccttggcttagaactgtcacaaatcacacttttgcgactgtt |
30145263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 39410731 - 39410689
Alignment:
| Q |
22 |
tgatgaaacctttactagtgtttgaattatgtgaatgtagtaa |
64 |
Q |
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| T |
39410731 |
tgatgaaacctttactagtgtttgaattaggagaatgtggtaa |
39410689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 303 - 384
Target Start/End: Original strand, 23871 - 23952
Alignment:
| Q |
303 |
ctacaagaaatttgtcattttgcgatacttactttgcaacccttgacttagaactgtcgcagattacacttttacgactgtt |
384 |
Q |
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||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||||| |
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| T |
23871 |
ctacaagaaatttgtcattttgcgacacttactttgcgactcttgacttagaactgtcgcagattacacttttgcgactgtt |
23952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 419
Target Start/End: Complemental strand, 12155922 - 12155807
Alignment:
| Q |
303 |
ctacaagaaatttgtcattttgcgatacttactttgcaacccttgacttagaactgtcgcagattacacttttacgactgttgttgcaactgttaggctt |
402 |
Q |
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|||||||||| ||| |||||||||| ||||||||||| |||||| |||| ||||||||| |||||||||||| || |||| ||| || ||||| ||| |
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| T |
12155922 |
ctacaagaaaattggcattttgcgacacttactttgcgacccttagcttataactgtcgc-gattacacttttgtgattgttactgcgacggttagtctt |
12155824 |
T |
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| Q |
403 |
aagggtcgcaggtttta |
419 |
Q |
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|||||||| |||||||| |
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| T |
12155823 |
aagggtcgtaggtttta |
12155807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 467
Target Start/End: Complemental strand, 3499328 - 3499161
Alignment:
| Q |
303 |
ctacaagaaatttgtcattttgcgatacttactttgcaacccttgacttagaactgtcgcagattacacttttacgactgttgttgcaactgttaggctt |
402 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||| |||||||| || ||||||| || || | | ||||||| ||| || ||||| | | |
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| T |
3499328 |
ctacaagaaatttgtcattttgcgacacttactttgcgacccttagcttagaacagttgcagattgcatttgtgcaactgttgctgcgacagttagac-t |
3499230 |
T |
|
| Q |
403 |
aagggtcgcaggttttacaac-----cttttttaagcaccctttcacaataaaacttttggccaaatatt |
467 |
Q |
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|||||||| || ||||| | | |||||||||||| | |||||| |||| |||||||||||||||| |
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| T |
3499229 |
aagggtcgtagattttatagcgcttttttttttaagcactc-ttcacattaaagcttttggccaaatatt |
3499161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 52667626 - 52667680
Alignment:
| Q |
303 |
ctacaagaaatttgtcattttgcgatacttactttgcaacccttgacttagaact |
357 |
Q |
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|||||||||||||| |||||||||||||||| ||||| |||||||| ||||||| |
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| T |
52667626 |
ctacaagaaatttggcattttgcgatacttagtttgcgacccttgaactagaact |
52667680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 39326582 - 39326546
Alignment:
| Q |
303 |
ctacaagaaatttgtcattttgcgatacttactttgc |
339 |
Q |
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|||||||||||||| |||||||||| ||||||||||| |
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| T |
39326582 |
ctacaagaaatttggcattttgcgacacttactttgc |
39326546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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