View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_low_115 (Length: 255)

Name: NF15962_low_115
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_low_115
NF15962_low_115
[»] chr1 (5 HSPs)
chr1 (18-246)||(11839302-11839529)
chr1 (87-243)||(17993894-17994052)
chr1 (84-243)||(2987894-2988055)
chr1 (84-229)||(4651924-4652070)
chr1 (84-182)||(35250113-35250212)
[»] chr3 (2 HSPs)
chr3 (84-243)||(30935163-30935325)
chr3 (84-243)||(1652662-1652822)
[»] chr5 (5 HSPs)
chr5 (87-243)||(31721825-31721980)
chr5 (157-242)||(24436031-24436118)
chr5 (134-201)||(31742361-31742429)
chr5 (155-222)||(36979124-36979191)
chr5 (134-182)||(39024278-39024327)
[»] chr7 (4 HSPs)
chr7 (88-214)||(9349858-9349984)
chr7 (84-225)||(38485700-38485845)
chr7 (87-204)||(46133098-46133209)
chr7 (140-182)||(12481081-12481123)
[»] chr2 (5 HSPs)
chr2 (84-242)||(18681210-18681372)
chr2 (98-243)||(9926373-9926518)
chr2 (84-175)||(12793575-12793667)
chr2 (84-245)||(31902195-31902350)
chr2 (84-243)||(915225-915389)
[»] chr8 (5 HSPs)
chr8 (88-243)||(32945481-32945636)
chr8 (84-243)||(41791040-41791200)
chr8 (88-226)||(10552416-10552554)
chr8 (84-226)||(35062602-35062744)
chr8 (142-243)||(30235903-30236004)
[»] chr6 (3 HSPs)
chr6 (84-243)||(12794249-12794411)
chr6 (98-243)||(26215794-26215940)
chr6 (96-200)||(21266263-21266367)


Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 11839302 - 11839529
Alignment:
Q  18 ctttagaggctcatgtgctcagggtaattggcagaggtgctgagaggaaagtagatcaagccttacaaggagttcttcggatgtggctcggtgttgggga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  11839302 ctttagaggctcatgtgctcagggtaattggcagaggtgctgagaggaaagtagatcaagccttacaaggagttctttggatgtggctcgatgttgggga 11839401  T
Q  118 tgaggattgagttcttttttacaaggtgttcttttggggtgagtagtggcgaagagtgttatggaagtcgtattttcagtggttggtaagtttaggaatc 217  Q
    ||||||||||||||| ||||||||| |||||||||||||||||| ||||| |||||||||||||| || || |||| |||||| ||||||||||||||||    
T  11839402 tgaggattgagttctcttttacaagatgttcttttggggtgagtggtggcaaagagtgttatggatgttgt-tttttagtggtcggtaagtttaggaatc 11839500  T
Q  218 agttttaggaggtgatgtttattttgatg 246  Q
    ||||||||||| |||||||||||||||||    
T  11839501 agttttaggagatgatgtttattttgatg 11839529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 87 - 243
Target Start/End: Complemental strand, 17994052 - 17993894
Alignment:
Q  87 gagttcttcggatgtggctcggtgttggggatgaggattgagttcttttttacaagg-tgttcttttggggtgagtagtggcgaagagtgttatggaagt 185  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||||  | |||||||| ||||||||||||||||| |||| ||| || |||||||   ||    
T  17994052 gagttcttcggatgtggctcgatgttggtgatgaggattgggttccctattacaagggtgttcttttggggtgagcagtgacgatgactgttatgagtgt 17993953  T
Q  186 cgtatttt-cagtggttggtaagtttaggaatcagttttaggaggtgatgtttattttg 243  Q
    ||| |||| ||||||| ||||||||||||||||| ||||| | ||||||||||||||||    
T  17993952 cgtttttttcagtggtaggtaagtttaggaatcacttttaaggggtgatgtttattttg 17993894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 84 - 243
Target Start/End: Complemental strand, 2988055 - 2987894
Alignment:
Q  84 aaggagttcttcggatgtggctcggtgttggggatgaggattgagttcttttttacaa-ggtgttcttttggggtgagtagtggcgaagagtgttatgga 182  Q
    ||||||||||||||||||||||||||||||| ||||||||    ||||| |||||||| |||||||||| | |||| | ||| |||| |||||||||| |    
T  2988055 aaggagttcttcggatgtggctcggtgttggtgatgaggacatggttctcttttacaagggtgttctttagaggtgcgaagttgcgacgagtgttatgaa 2987956  T
Q  183 agtc-gtattttcagtggttggtaagtttaggaatcagttttaggaggtgatgtttattttg 243  Q
     |||  | ||||||||||||||||||| || || ||||||||||  ||||||||||||||||    
T  2987955 tgtcatttttttcagtggttggtaagtatatgagtcagttttagtgggtgatgtttattttg 2987894  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 229
Target Start/End: Original strand, 4651924 - 4652070
Alignment:
Q  84 aaggagttcttcggatgtggctcggtgttggggatgaggattgagttcttttttacaagg-tgttcttttggggtgagtagtggcgaagagtgttatgga 182  Q
    |||||||||||||||||||||||  |||||| |||| ||| |  ||||| |||||||||| |||||||||| ||||||| |||| || ||||||| | ||    
T  4651924 aaggagttcttcggatgtggctcattgttggtgatggggacttggttctcttttacaagggtgttcttttgaggtgagttgtggtgacgagtgttttaga 4652023  T
Q  183 agtcgtattttcagtggttggtaagtttaggaatcagttttaggagg 229  Q
     ||||| ||||||||||||||||| | ||||| |||||| |||||||    
T  4652024 tgtcgttttttcagtggttggtaactataggagtcagttgtaggagg 4652070  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 35250212 - 35250113
Alignment:
Q  84 aaggagttcttcggatgtggctcggtgttggggatgaggattgagttcttttttacaagg-tgttcttttggggtgagtagtggcgaagagtgttatgga 182  Q
    ||||||||||||||| ||||| |  |||||  |||||||| ||  |||| |||||||||| |||||||||| ||||||||||||||| |||| |||||||    
T  35250212 aaggagttcttcggaggtggcacattgttgaagatgaggactggattctcttttacaaggatgttcttttgaggtgagtagtggcgacgagttttatgga 35250113  T

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Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 84 - 243
Target Start/End: Complemental strand, 30935325 - 30935163
Alignment:
Q  84 aaggagttcttcggatgtggctcggtgttggggatgaggattgagttcttttttacaa-ggtgttcttttggggtgagtagtggcgaagagtgttatgga 182  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||| ||||||||||||||| ||||||||| ||    
T  30935325 aaggagttcttcggatgtggctcggtgttggtgatgaggactgagttctcttttacaagggtgttcttttgaggtgagtagtggcgacgagtgttataga 30935226  T
Q  183 agtcgtatttt--cagtggttggtaagtttaggaatcagttttaggaggtgatgtttattttg 243  Q
     ||||| ||||  | |||| |||||||| || || ||||||||||| ||||||||||||||||    
T  30935225 tgtcgtttttttccggtggctggtaagtataagagtcagttttagggggtgatgtttattttg 30935163  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 243
Target Start/End: Complemental strand, 1652822 - 1652662
Alignment:
Q  84 aaggagttcttcggatgtggctcggtgttggggatgaggattgagttcttttttacaagg-tgttcttttggggtgagtagtggcgaagagtgttatgga 182  Q
    ||||||||| ||| || |||||||||||||| ||| |||| ||  | || |||| ||||| |||||||||| ||||||||||| ||| |||||||||| |    
T  1652822 aaggagttcctcgaatttggctcggtgttggtgataaggaatggttcctctttttcaagggtgttcttttgaggtgagtagtgacgatgagtgttatgaa 1652723  T
Q  183 agtcgtattttcagtggttggtaagtttaggaatcagttttaggaggtgatgtttattttg 243  Q
     ||||| |||| |||||||| |||   ||| | ||||||||||| ||||||||||||||||    
T  1652722 tgtcgtttttttagtggttgttaaacatagaagtcagttttagggggtgatgtttattttg 1652662  T

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Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 87 - 243
Target Start/End: Original strand, 31721825 - 31721980
Alignment:
Q  87 gagttcttcggatgtggctcggtgttggggatgaggattgagttcttttttacaagg-tgttcttttggggtgagtagtggcgaagagtgttatggaagt 185  Q
    |||||||| |||||||||||| |||||| || ||||| |||||||| |||||||||| |||| ||||| ||||||||||||||| |||||||||||| ||    
T  31721825 gagttctttggatgtggctcgatgttggtgacgaggactgagttctcttttacaagggtgtttttttgaggtgagtagtggcgacgagtgttatggatgt 31721924  T
Q  186 cgtattttcagtggttggtaagtttaggaatcagttttaggaggtgatgtttattttg 243  Q
    ||| ||||||||||||||||||| ||||| ||||||||||  ||||||||||||||||    
T  31721925 cgttttttcagtggttggtaagtataggagtcagttttag--ggtgatgtttattttg 31721980  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 24436031 - 24436118
Alignment:
Q  157 tgagtagtggcgaagagtgttatggaagtcgtatttt--cagtggttggtaagtttaggaatcagttttaggaggtgatgtttatttt 242  Q
    ||||||||||||| ||||||||| || ||||| ||||  ||||||||||||||||||||| |||| ||| ||||||||| ||| ||||    
T  24436031 tgagtagtggcgacgagtgttatagatgtcgttttttttcagtggttggtaagtttaggagtcagctttcggaggtgatttttttttt 24436118  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 31742361 - 31742429
Alignment:
Q  134 ttttacaagg-tgttcttttggggtgagtagtggcgaagagtgttatggaagtcgtattttcagtggtt 201  Q
    |||||||||| |||||||||||||||||||||||||| | ||||||||||  |||| ||||||||||||    
T  31742361 ttttacaagggtgttcttttggggtgagtagtggcgatgggtgttatggatatcgttttttcagtggtt 31742429  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 36979124 - 36979191
Alignment:
Q  155 ggtgagtagtggcgaagagtgttatggaagtcgtattttcagtggttggtaagtttaggaatcagttt 222  Q
    |||||||||||||||  |||||| |||| || || ||||||||||||||||||| || || |||||||    
T  36979124 ggtgagtagtggcgaccagtgttttggatgttgttttttcagtggttggtaagtataagagtcagttt 36979191  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 39024327 - 39024278
Alignment:
Q  134 ttttacaagg-tgttcttttggggtgagtagtggcgaagagtgttatgga 182  Q
    |||||||||| ||||||||| |||||||||||| ||| ||||||||||||    
T  39024327 ttttacaagggtgttcttttagggtgagtagtgacgatgagtgttatgga 39024278  T

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Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 88 - 214
Target Start/End: Original strand, 9349858 - 9349984
Alignment:
Q  88 agttcttcggatgtggctcggtgttggggatgaggattgagttcttttttacaa-ggtgttcttttggggtgagtagtggcgaagagtgttatggaagtc 186  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| |||    
T  9349858 agttcttcggatgtggctcggtgttggtgatgagtattgtgttctcttttacaagggtgttcttttggggtgagtagtggcgacgagtgttatggatgtc 9349957  T
Q  187 gtattttcagtggttggtaagtttagga 214  Q
    || |||  |||||||||||||| |||||    
T  9349958 gt-tttctagtggttggtaagtatagga 9349984  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 38485700 - 38485845
Alignment:
Q  84 aaggagttcttcggatgtggctcggtgttggggatgaggattgagttcttttttacaa-ggtgttcttttggggtgagtagtggcgaagagtgttatgga 182  Q
    |||||||||||| ||||||||||  |||||| ||| |||| |  ||||| |||||||| |||||||||||| ||||||| ||||||| ||||||| ||||    
T  38485700 aaggagttcttcagatgtggctcattgttggtgataaggacttggttctcttttacaaaggtgttcttttgaggtgagttgtggcgacgagtgttttgga 38485799  T
Q  183 agtc---gtattttcagtggttggtaagtttaggaatcagttttag 225  Q
     |||    | ||||||||||||||||| | ||||| ||||||||||    
T  38485800 tgtcatttttttttcagtggttggtaactataggagtcagttttag 38485845  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 204
Target Start/End: Complemental strand, 46133209 - 46133098
Alignment:
Q  87 gagttcttcggatgtggctcggtgttggggatgaggattgagttcttttttacaaggtgttcttttggggtgagtagtggcgaagagtgttatggaagtc 186  Q
    |||||||| ||||||| ||||||||||| ||||| || || ||||| ||||||||||||||       ||||||||||||| | ||||||| |||| |||    
T  46133209 gagttctttggatgtgactcggtgttggtgatgatgactgggttctcttttacaaggtgtt------tggtgagtagtggcaacgagtgttttggatgtc 46133116  T
Q  187 gtattttcagtggttggt 204  Q
    || |||||||||||||||    
T  46133115 gttttttcagtggttggt 46133098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 12481081 - 12481123
Alignment:
Q  140 aaggtgttcttttggggtgagtagtggcgaagagtgttatgga 182  Q
    |||||||||||||||||||||||||| ||| | ||||||||||    
T  12481081 aaggtgttcttttggggtgagtagtgacgatgggtgttatgga 12481123  T

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Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 84 - 242
Target Start/End: Original strand, 18681210 - 18681372
Alignment:
Q  84 aaggagttcttcggatgtggctcggtgttggggatgaggattgagttcttttttacaagg-tgttcttttggggtgagtagtggcgaagagtgttatgga 182  Q
    |||||| ||||||||||||||||  |||||| |||||||| |  ||||| |||||||||| |||||||||| ||||||| ||||||| ||||||| ||||    
T  18681210 aaggagctcttcggatgtggctcaatgttggtgatgaggactaggttctcttttacaagggtgttcttttgaggtgagtggtggcgacgagtgttttgga 18681309  T
Q  183 agtcgtattttc---agtggttggtaagtttaggaatcagttttaggaggtgatgtttatttt 242  Q
     ||||| ||||    |||||||||||||| ||||| ||||||||||| |||||||||||||||    
T  18681310 tgtcgtgttttttttagtggttggtaagtataggagtcagttttagggggtgatgtttatttt 18681372  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 98 - 243
Target Start/End: Original strand, 9926373 - 9926518
Alignment:
Q  98 atgtggctcggtgttggggatgaggattgagttcttttttacaagg-tgttcttttggggtgagtagtggcgaagagtgttatggaagtcgtattttcag 196  Q
    |||||||||| |||||| |||||||| || ||||| |||||||||| |||| ||||| ||||||||||||||| |||||||||||| |||   |||||||    
T  9926373 atgtggctcgttgttggtgatgaggactgggttctcttttacaagggtgtttttttgaggtgagtagtggcgacgagtgttatggatgtc--tttttcag 9926470  T
Q  197 tggttggtaagtttaggaatcagttttagg-aggtgatgtttattttg 243  Q
    |||| ||||||| ||||| |||||||||||  ||||||||||||||||    
T  9926471 tggtcggtaagtataggagtcagttttaggcgggtgatgtttattttg 9926518  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 12793667 - 12793575
Alignment:
Q  84 aaggagttcttcggatgtggctcggtgttggggatgaggattgagttcttttttac-aaggtgttcttttggggtgagtagtggcgaagagtg 175  Q
    ||||||||||||||||||||||||||||||| |||||| | | |||||| |||||| |||||||||||||| |||||||||||| || |||||    
T  12793667 aaggagttcttcggatgtggctcggtgttggtgatgagaagtaagttctcttttacaaaggtgttcttttgaggtgagtagtggtgacgagtg 12793575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 245
Target Start/End: Complemental strand, 31902350 - 31902195
Alignment:
Q  84 aaggagttcttcggatgtggctcggtgttggggatgaggattgagttcttttttacaaggtgttcttttggggtgagtagtggcgaagagtgttatggaa 183  Q
    ||||||||||||||||||| ||| ||||||| | |||||| |  ||||| |||||||||||||||      ||| ||||||||||| |||||||   ||     
T  31902350 aaggagttcttcggatgtgactcagtgttggtgttgaggacttggttctcttttacaaggtgttc------ggttagtagtggcgacgagtgtttcagat 31902257  T
Q  184 gtcgtattttcagtggttggtaagtttaggaatcagttttaggaggtgatgtttattttgat 245  Q
    ||||| |||||| |||||||| ||| ||||| ||||||||| | | ||||||||||||||||    
T  31902256 gtcgttttttcactggttggttagtataggagtcagttttatgggttgatgtttattttgat 31902195  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 243
Target Start/End: Complemental strand, 915389 - 915225
Alignment:
Q  84 aaggagttcttcggatgtggctcggtgttggggatgaggattgagttcttttttacaagg---tg--ttcttttggggtgagtagtggcgaagagtgtta 178  Q
    |||||||||||||||||| |||| ||||||| ||||||||||| ||||| | ||||||||   ||  || ||||    |||  |||||||| ||  ||||    
T  915389 aaggagttcttcggatgttgctcagtgttggtgatgaggattgggttctctattacaagggtttggtttttttttttttgaacagtggcgatgaccgtta 915290  T
Q  179 tggaagtcgtattttcagtggttggtaagtttaggaatcagttttaggaggtgatgtttattttg 243  Q
    |||| ||| | ||||||||||| || ||||| |||||||| ||||||| | ||||||||||||||    
T  915289 tggatgtcattttttcagtggtaggcaagttcaggaatcacttttaggggatgatgtttattttg 915225  T

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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 88 - 243
Target Start/End: Complemental strand, 32945636 - 32945481
Alignment:
Q  88 agttcttcggatgtggctcggtgttggggatgaggattgagttcttttttacaag-gtgttcttttggggtgagtagtggcgaagagtgttatggaagtc 186  Q
    |||||||| |||||| ||||||||||| ||||| || ||  |||||||||||||  ||||||||||| ||||||||||||||| |||||||||||| |||    
T  32945636 agttcttcagatgtgactcggtgttggtgatgatgactggtttcttttttacaaaagtgttcttttgaggtgagtagtggcgatgagtgttatggatgtc 32945537  T
Q  187 gtattttcagtggttggtaagtttaggaatcagttttaggaggtgatgtttattttg 243  Q
    ||  ||||||  || |||| || ||||| ||||||||| | | ||||||||||||||    
T  32945536 gttctttcag-cgtcggtaggtataggagtcagttttaagggctgatgtttattttg 32945481  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 84 - 243
Target Start/End: Complemental strand, 41791200 - 41791040
Alignment:
Q  84 aaggagttcttcggatgtggctcggtgttggggatgaggattgagttcttttttacaagg-tgttcttttggggtgagtagtggcgaagagtgttatgga 182  Q
    |||||||||||| |||||| |||  | |||| |||||||| ||  | || |||||||||| |||||||||| |||||||||||| || ||| |||||| |    
T  41791200 aaggagttcttcagatgtgactcacttttggtgatgaggactggttcctcttttacaagggtgttcttttgaggtgagtagtggtgatgagggttatgaa 41791101  T
Q  183 agtcgtattttcagtggttggtaagtttaggaatcagttttaggaggtgatgtttattttg 243  Q
     ||||| |||||||||||  |||||| || || ||||||||||| ||||||||||||||||    
T  41791100 tgtcgttttttcagtggtcagtaagtatatgagtcagttttagggggtgatgtttattttg 41791040  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 226
Target Start/End: Original strand, 10552416 - 10552554
Alignment:
Q  88 agttcttcggatgtggctcggtgttggggatgaggattgagttcttttttacaagg-tgttcttttggggtgagtagtggcgaagagtgttatggaagtc 186  Q
    ||||||||||| ||||| | ||||||| |||||||| || ||||| |||||||||| |||||||||| ||||||||||||||| |||| ||||||| |||    
T  10552416 agttcttcggaggtggcacagtgttggagatgaggactgggttctcttttacaagggtgttcttttgaggtgagtagtggcgacgagttttatggatgtc 10552515  T
Q  187 gtattttcagtggttggtaagtttaggaatcagttttagg 226  Q
    || |||| |||||||| | ||| || || |||||||||||    
T  10552516 gt-tttttagtggttgcttagtatatgagtcagttttagg 10552554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 35062602 - 35062744
Alignment:
Q  84 aaggagttcttcggatgtggctcggtgttggggatgaggattgagttcttttttacaagg-tgttcttttggggtgagtagtggcgaagagtgttatgga 182  Q
    ||||||||||||||| ||||| |  |||||| |||||||| || ||||| |||||||||| |||||| ||| ||||||||||||||| ||||||||||||    
T  35062602 aaggagttcttcggaggtggcacaatgttggtgatgaggactgggttctcttttacaagggtgttctcttgaggtgagtagtggcgacgagtgttatgga 35062701  T
Q  183 agtcgtattttcagtggttggtaagtttaggaatcagttttagg 226  Q
     || || |||| |||||||||| ||| || || |||||||||||    
T  35062702 tgttgt-tttttagtggttggttagtatatgagtcagttttagg 35062744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 30236004 - 30235903
Alignment:
Q  142 ggtgttcttttggggtgagtagtggcgaagagtgttatggaagtcgtattttcagtggttggtaagtttaggaatcagttttaggaggtgatgtttattt 241  Q
    ||||||| |||| ||||||||||||||| |||||||||||| ||||| | || | |||| ||| | | ||||| ||||||||||| ||||||||||||||    
T  30236004 ggtgttcgtttgtggtgagtagtggcgatgagtgttatggatgtcgtttatttaatggtcggttaatataggagtcagttttagggggtgatgtttattt 30235905  T
Q  242 tg 243  Q
    ||    
T  30235904 tg 30235903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 243
Target Start/End: Original strand, 12794249 - 12794411
Alignment:
Q  84 aaggagttcttcggatgtggctcggtgttggggatgaggattgagttcttttttacaagg-tgttcttttggggtgagtagtggcgaagagtgttatgga 182  Q
    ||||| |||||| |||||| ||||||||||||| |||||| ||  |||| ||||| |||| |||||||||| ||||||||||||| | |||||||||| |    
T  12794249 aaggatttcttcagatgtgactcggtgttggggttgaggactggtttctcttttataagggtgttcttttgaggtgagtagtggcaatgagtgttatgaa 12794348  T
Q  183 agtcgtattttcagtggttggtaagtttaggaatca--gttttaggaggtgatgtttattttg 243  Q
     ||||| ||||||||||| | ||||| ||||| |||  |||||| |  |||||||||||||||    
T  12794349 tgtcgttttttcagtggtcgataagtataggagtcagcgttttaaggtgtgatgtttattttg 12794411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 243
Target Start/End: Complemental strand, 26215940 - 26215794
Alignment:
Q  98 atgtggctcggtgttggggatgaggattgagttcttttttacaa-ggtgttcttttggggtgagtagtggcgaagagtgttatggaagtcgtatt-ttca 195  Q
    ||||||||| ||||||| |||||||| |   |||| |||||||  |||||||||||| ||||||| |||| || |||||||||| | || || || ||||    
T  26215940 atgtggctcagtgttggtgatgaggactagtttctcttttacattggtgttcttttgaggtgagtcgtggtgacgagtgttatgaatgttgttttcttca 26215841  T
Q  196 gtggttggtaagtttaggaatcagttttaggaggtgatgtttattttg 243  Q
    ||| | ||||| | ||||||||||||||||| |||| |||||||||||    
T  26215840 gtg-tcggtaaatataggaatcagttttagggggtgttgtttattttg 26215794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 21266263 - 21266367
Alignment:
Q  96 ggatgtggctcggtgttggggatgaggattgagttcttttttacaa-ggtgttcttttggggtgagtagtggcgaagagtgttatggaagtcgtattttc 194  Q
    ||||||||||| || |||| | ||||||||||||| | |||||||| ||||||| |||||||||||||||| ||| |  |||| |||| ||||| |||||    
T  21266263 ggatgtggctcagttttggtgttgaggattgagttttcttttacaacggtgttcctttggggtgagtagtgacgatggttgttctggatgtcgt-ttttc 21266361  T
Q  195 agtggt 200  Q
    ||||||    
T  21266362 agtggt 21266367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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