View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_117 (Length: 252)
Name: NF15962_low_117
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_117 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 45044465 - 45044238
Alignment:
| Q |
18 |
gatatgaattaaatttttcttttattgtgattacaaagaaaagaagaccataaacttctactttnnnnnnntaacgtcaattgtcgttgatgttttagac |
117 |
Q |
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| T |
45044465 |
gatatcaattaaatttttcttttattgtgattacaaagac-----gaccataaacttctacttttaaaaaataacgtcaattgtcgttgatgttttagac |
45044371 |
T |
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| Q |
118 |
aatttacaaatagtattctatctattagtacaaaatataaacaaaaacgaatcaaagaaaattaatgtatttgatttaaatacatcaattttatttcact |
217 |
Q |
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| T |
45044370 |
aatttacaaatagtactctatctattagtacaa--tataaacaaaaatgaatcaaagaaaattaatgtatttgatttaaatacatcaattttgtttcact |
45044273 |
T |
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| Q |
218 |
catttagtttatattttgtaggtgatgaaacatga |
252 |
Q |
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| T |
45044272 |
cgtttaatttatattttgtaggtgatgaaacatga |
45044238 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 35549280 - 35549238
Alignment:
| Q |
148 |
caaaatataaacaaaaacgaatcaaagaaaattaatgtatttg |
190 |
Q |
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| T |
35549280 |
caaaatataaacaaaaacgagtcaaacaaaattgatgtatttg |
35549238 |
T |
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