View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_12 (Length: 504)
Name: NF15962_low_12
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 9 - 494
Target Start/End: Complemental strand, 2772754 - 2772279
Alignment:
| Q |
9 |
aattatttgacctatgtttctccatttcttctctcaaaaactcaagtttttcctgatccacaacacatgtattccctatacaaatcaccaaaccaaaata |
108 |
Q |
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| T |
2772754 |
aattatttgacctatgtttctccatttcttctctcaaaaactcaagtttttcctgatccacaacacgagtattccatatacaaatcaccaaaccaaaata |
2772655 |
T |
|
| Q |
109 |
aacaaaatagaaacaatgaaactcacgtgttgaatttgaagattcataattaataacaccctcctaaatgaaatataagcaaaaagatagtaataatata |
208 |
Q |
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| T |
2772654 |
---------gaaacaatgaaactcacgtgttgaatttgaagattcataattaataacaccctcctaaatgaaatataagcaaaaggatagtaataatata |
2772564 |
T |
|
| Q |
209 |
gatgtacttggacacattgaatttttatgatgtcaaattggactaaccgaaccaacgaggatcaggttgaattcttgtgctggggagatccttggactga |
308 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2772563 |
gatgtacttggacacattgaatttttatgaggtcaaattggactaaccgaaccaacgaggatcagattgaattcttgtgctggggagatccttggactga |
2772464 |
T |
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| Q |
309 |
aactcgttgtgtaagacttttcccttcccgttacgtacgggtttggttctgtacattttaagacggcgaatggtggcagcagaccgccactcttttttag |
408 |
Q |
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| T |
2772463 |
aactcgttgtgtaagacttttccctttctgttacgtacgggtttggttctgtacattttaagacggcgaatggtggcagcagaccgccactcttttttaa |
2772364 |
T |
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| Q |
409 |
cgacattgctcctgttgacgtcaagggagtgctttggttttcccggagacgttaatctttctcacttttttcttggcatttctctg |
494 |
Q |
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| T |
2772363 |
cgacattgctcctgttgacgtcaagggagtgctttgg-tttcccgaagacgttaatctttctcacttttttcttggcatttctctg |
2772279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 491
Target Start/End: Original strand, 33493247 - 33493392
Alignment:
| Q |
345 |
acgggtttggttctgtacattttaagacggcgaatggtggcagcagaccgccactcttttttagcgacattgctcctgttgacgtcaagggagtgctttg |
444 |
Q |
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||||||||| || |||||||||| |||||||||| || |||||||| || ||| |||| ||||||||||||||| ||||||||| || |||||||| | |
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| T |
33493247 |
acgggtttgcttttgtacatttttagacggcgaacagttgcagcagaacgtgacttttttgtagcgacattgctccggttgacgtcgagagagtgcttag |
33493346 |
T |
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| Q |
445 |
gttttcccggagacgttaatctttctcacttttttcttggcatttct |
491 |
Q |
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| T |
33493347 |
gtttt-ccagagacattaacctttctcacattcttcttcgaatttct |
33493392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 33481622 - 33481688
Alignment:
| Q |
20 |
ctatgtttctccatttcttctctcaaaaactcaagtttttcctgatccacaacacatgtattcccta |
86 |
Q |
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| T |
33481622 |
ctatgcttcgccatttcttctctgaaaaactcaagctctttctgattcacaacacgagtattcccta |
33481688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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