View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_124 (Length: 248)
Name: NF15962_low_124
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_124 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 42659544 - 42659348
Alignment:
| Q |
15 |
atatagtgcttaaacatttatgatccctaaaatgttaaaacaaaattatttttt-attattnnnnnnn-tgtctatttgtatgtgcacttacacgctaca |
112 |
Q |
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| T |
42659544 |
atatagtgcttaaacatttatgatctctaaaatgttaaaaaaaaaatatttttttattattaaaaaaaatgtctatttgtatgtgcacttacacgctaca |
42659445 |
T |
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| Q |
113 |
tttgtcttgtgaccaaacataactagctcctcacactctaccttgatcggtcattcaaagttccaaggtttacaattcttgattcatctacaaatat |
209 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42659444 |
tttgtctggtgaccaaacataacgagctcctcacactctaccttgatcggtcattcaaagttccaaggtttacaattcttgattcatctacaaatat |
42659348 |
T |
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