View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_125 (Length: 247)
Name: NF15962_low_125
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_125 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 27700395 - 27700633
Alignment:
| Q |
1 |
tttttgaggtcatgaattcaaaccttgctgtccatccacagaaaatccttctataggaaattatatatatcaaagtacaatattgaatgtagaaagaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27700395 |
tttttgaggtcatgaattcaaaccttgctgtccatccacacaaaatccttctataggaaattatatatatcaaagtacaatattgaatgtagaaagaatt |
27700494 |
T |
|
| Q |
101 |
tt-tgtagggaaaaatctagaaagagttgatgattaattaaatatagtattgtttactattttaaattaaagcaagtccagcatctcttgatgactcttc |
199 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27700495 |
ttttgtagggaaaaatctagaaagagttgatgattaattaaatatagtattgtttactattttaaattaaagcaagtccagcatctcttgatgactcttc |
27700594 |
T |
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| Q |
200 |
aaagttcaaaccttcttcatttttcttcgtttttgcctt |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
27700595 |
aaagttcaaaccttcttcatttttcttcgtttttgcctt |
27700633 |
T |
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