View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15962_low_126 (Length: 246)
Name: NF15962_low_126
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_126 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 5867022 - 5867244
Alignment:
| Q |
16 |
aatagaagagaattatggccacaaacgaaaactacacccacttcctattgaaaaacttgaagaactaaaatcacgtgattgaaatttgactgtgttatta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5867022 |
aatagaagagaattatggccacaaacgaaaactacacccacttcctattgaaaaacttgaagaactaaa-tcacgtgattgaaatttgactgtgttatta |
5867120 |
T |
|
| Q |
116 |
ttgagttagaagacaatgcataacatccaagctaaactcagatatattggaccccatctatttggcctctttattcattgctcttttcaataatcttaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5867121 |
ttgagttagaagacaatgcataacatccaagctaaactcagatatattggaccctatctatttggcctctttattcattgctcttttcaataatcttaag |
5867220 |
T |
|
| Q |
216 |
ttgctgtaatttattcatattctt |
239 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
5867221 |
ttgctgtaatttattcatattctt |
5867244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University