View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_low_128 (Length: 244)

Name: NF15962_low_128
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_low_128
NF15962_low_128
[»] chr2 (25 HSPs)
chr2 (16-219)||(9065591-9065794)
chr2 (22-219)||(8573503-8573700)
chr2 (16-219)||(16269030-16269233)
chr2 (33-219)||(9328557-9328743)
chr2 (29-219)||(9061139-9061329)
chr2 (39-215)||(9284192-9284368)
chr2 (26-209)||(9291894-9292071)
chr2 (33-223)||(10353067-10353257)
chr2 (33-190)||(9320940-9321097)
chr2 (97-219)||(10335866-10335988)
chr2 (30-219)||(7115640-7115832)
chr2 (24-219)||(9274470-9274665)
chr2 (103-215)||(10371886-10371998)
chr2 (111-219)||(12006116-12006224)
chr2 (96-219)||(12012544-12012667)
chr2 (30-219)||(9315974-9316157)
chr2 (109-219)||(9364662-9364772)
chr2 (30-219)||(10347740-10347929)
chr2 (31-219)||(12018880-12019074)
chr2 (31-219)||(11987488-11987673)
chr2 (110-193)||(7611974-7612057)
chr2 (110-193)||(17566107-17566190)
chr2 (112-182)||(8579522-8579592)
chr2 (175-215)||(8576411-8576451)
chr2 (30-75)||(10335811-10335856)
[»] scaffold0667 (1 HSPs)
scaffold0667 (16-223)||(4412-4619)
[»] chr3 (2 HSPs)
chr3 (28-219)||(37462442-37462636)
chr3 (29-172)||(39427594-39427740)
[»] chr7 (3 HSPs)
chr7 (32-219)||(45243656-45243843)
chr7 (51-209)||(45230408-45230569)
chr7 (32-184)||(45237907-45238059)
[»] chr1 (4 HSPs)
chr1 (33-209)||(29443329-29443505)
chr1 (29-219)||(29453302-29453492)
chr1 (29-219)||(29467778-29467968)
chr1 (33-206)||(29423223-29423396)
[»] chr8 (1 HSPs)
chr8 (24-219)||(41966703-41966898)
[»] chr4 (2 HSPs)
chr4 (96-215)||(26574882-26575001)
chr4 (126-193)||(561273-561340)
[»] chr5 (1 HSPs)
chr5 (111-189)||(36224454-36224532)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 9065794 - 9065591
Alignment:
Q  16 aaaatctcaattccttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaag 115  Q
    |||| ||||||| ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9065794 aaaacctcaattgcttccaacagaaccttacttccatcaccggaataacctagaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaag 9065695  T
Q  116 taaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagacagcctcc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||    
T  9065694 taaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaatattagtagtttcataattcaaaatcatacaaagacaccctcc 9065595  T
Q  216 caaa 219  Q
    ||||    
T  9065594 caaa 9065591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 8573700 - 8573503
Alignment:
Q  22 tcaattccttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaa 121  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| | | ||||||| |  |||||| ||||| || ||||||||||    
T  8573700 tcaattccttccaacagaaccttacttccatcactagaataacctaaaggcctcgaagatttaaaatgtggagtgaaacacgatttaacgaaagtaaaaa 8573601  T
Q  122 gtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagacagcctcccaaa 219  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||||  |||||||||||| || ||||||    
T  8573600 gtttacaccaactatctctagaaccatattctttcatcacccaaacatcaatttcagtggtttcataattcacagacatacaaagacacccacccaaa 8573503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 16269030 - 16269233
Alignment:
Q  16 aaaatctcaattccttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaag 115  Q
    |||| |||||||||||| || | |||||||||||||||||| |||||||||| |||  | |||  |  ||||||||||  |||||| ||||| ||||| |    
T  16269030 aaaacctcaattccttcaaagagaaccttacttccatcactagaataacctataggatttgaatatcgcaaatgtgaagtgaaacacgatttaaccaagg 16269129  T
Q  116 taaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagacagcctcc 215  Q
    |||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| |||||    
T  16269130 taaaaagtttgcaccaactatctctatatccatactctttcatcacccaaacatcaattttagtagtttcataattcacagttatacaaagacatcctcc 16269229  T
Q  216 caaa 219  Q
    ||||    
T  16269230 caaa 16269233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 33 - 219
Target Start/End: Original strand, 9328557 - 9328743
Alignment:
Q  33 caacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaa 132  Q
    ||||| ||||||  ||||||||||  ||||||||||||||||| ||| | ||||| || |||||||||| ||||| |||| |||||||||||||||||||    
T  9328557 caacaaaaccttttttccatcactcaaataacctaaaggcctcaaagatttcaaaggtaaatggaaacacgatttaaccatagtaaaaagtttacaccaa 9328656  T
Q  133 ctatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagacagcctcccaaa 219  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||| ||||||||||||||||| | |||| |||||||| |||||||||    
T  9328657 ctatctctatatccatattgtttcatcacccaaacatcaatttcagtagtttcataattcaaagtcatgcaaagacaccctcccaaa 9328743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 29 - 219
Target Start/End: Complemental strand, 9061329 - 9061139
Alignment:
Q  29 cttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttaca 128  Q
    ||||||||| |||||||| ||||||||| ||||||| ||| |||||| ||     |||| |||||| |||||| ||||| ||||||||||||||||||||    
T  9061329 cttccaacagaaccttacctccatcactagaataacataacggcctcaaaaagtccaaaggtgaattgaaacacgatttaaccaaagtaaaaagtttaca 9061230  T
Q  129 ccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagacagcctcccaaa 219  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||  ||| |||||||| || ||||||    
T  9061229 ccaactatctctagatccatagtctttcatcacccaaacatcaattttagtagcttcataattcacagacatgcaaagacacccacccaaa 9061139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 39 - 215
Target Start/End: Complemental strand, 9284368 - 9284192
Alignment:
Q  39 aaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaactatct 138  Q
    ||||||||| |||||||| |||||||||||||||||| ||| | ||||| || ||  ||| |  ||||| ||||||||||||| ||||||||||||||||    
T  9284368 aaccttactaccatcactagaataacctaaaggcctcaaagatttcaaacgtaaagtgaaccgtgatttaaccaaagtaaaaattttacaccaactatct 9284269  T
Q  139 ctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagacagcctcc 215  Q
    ||||| ||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| |||||| |||||    
T  9284268 ctagaaccatattctttcatcacccaaacgtcaattttagtagtttgataattcacaatcatactaagacaacctcc 9284192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 26 - 209
Target Start/End: Original strand, 9291894 - 9292071
Alignment:
Q  26 ttccttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagttt 125  Q
    |||| ||||||| ||||||||||||||| || ||||||| |||||||||| ||| | ||||| |||||  |      ||||| |||||||||||||||||    
T  9291894 ttccgtccaacagaaccttacttccatccctagaataacataaaggcctcaaagatttcaaa-gtgaaccgc-----gatttaaccaaagtaaaaagttt 9291987  T
Q  126 acaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagaca 209  Q
    |||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  9291988 acaccaactatctctagaaccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagaca 9292071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 33 - 223
Target Start/End: Original strand, 10353067 - 10353257
Alignment:
Q  33 caacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaa 132  Q
    ||||| ||||||  ||| |||||| |||||||||||| ||||| ||| |  |||| || ||| |||| ||||||| |||| |||||||||||||||||||    
T  10353067 caacaaaaccttttttctatcactcgaataacctaaaagcctcaaagattgcaaaggtaaatcgaaagaagatttaaccacagtaaaaagtttacaccaa 10353166  T
Q  133 ctatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagacagcctcccaaagcag 223  Q
    || |||||| ||||||||||||||||||||||| ||||||||||||||  || ||||| |||||||||||||||||| ||||| |||||||    
T  10353167 ctctctctacatccatattctttcatcacccaaacatcaattttagtatctttataatccacaatcatacaaagacaccctcctaaagcag 10353257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 9320940 - 9321097
Alignment:
Q  33 caacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaa 132  Q
    ||||| ||||||  |||||||||| |||||||||||||||||| ||| | ||||| || ||| | |||| ||||| |||| |||||||||||||||||||    
T  9320940 caacaaaaccttttttccatcactcgaataacctaaaggcctcaaagatttcaaaggtaaatcgtaacacgatttaaccatagtaaaaagtttacaccaa 9321039  T
Q  133 ctatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataat 190  Q
    ||||||||||| ||||||||||||||||||||| |||||| ||| |||||||| ||||    
T  9321040 ctatctctagaaccatattctttcatcacccaaacatcaacttttgtagtttcgtaat 9321097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 97 - 219
Target Start/End: Original strand, 10335866 - 10335988
Alignment:
Q  97 aaacaagatttgaccaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaa 196  Q
    ||||| ||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| ||||||||||     
T  10335866 aaacacgatttaaccaaagtaaaatgtttacaccaactatctctacagccatattctttcatcacccaaacatcaattttagtagtttgataattcacag 10335965  T
Q  197 tcatacaaagacagcctcccaaa 219  Q
     || ||||||||| |||||||||    
T  10335966 gcaaacaaagacaccctcccaaa 10335988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 219
Target Start/End: Complemental strand, 7115832 - 7115640
Alignment:
Q  30 ttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagc-tgt---caaatgtgaatggaaacaagatttgaccaaagtaaaaagttt 125  Q
    |||||| | |||||| ||||||||||| ||||||||||||||||| ||| | |||   ||||  | ||| |||||| || || ||||| |||||||||||    
T  7115832 ttccaatagaaccttgcttccatcactagaataacctaaaggcct-gaaccatgtaatcaaagataaatcgaaacacgaattaaccaatgtaaaaagttt 7115734  T
Q  126 acaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagacagcctcccaaa 219  Q
    |||||| || |||||||||||||||| ||||||||||||| ||||  |||||||||||  |||||||||||||||||||||||| |||||||||    
T  7115733 acaccagctgtctctagatccatattgtttcatcacccaaacatctgttttagtagttctataattcacaatcatacaaagacaccctcccaaa 7115640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 9274470 - 9274665
Alignment:
Q  24 aattccttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagt 123  Q
    |||||||||||||| |||||||||||||||||| ||||||| |||||||||  ||  |  ||||| |  | ||||||||| ||  | |||||||||||||    
T  9274470 aattccttccaacagaaccttacttccatcactagaataacataaaggcctaaaaatttccaaatctacaaggaaacaaggttccatcaaagtaaaaagt 9274569  T
Q  124 ttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagacagcctcccaaa 219  Q
    ||||||||||||||| |||| ||||||||||||||||||||| | |||| || |||| ||  |||||||| | ||||||||||||| ||| |||||    
T  9274570 ttacaccaactatctgtagaaccatattctttcatcacccaaacttcaaattcagtatttcgataattcaaagtcatacaaagacacccttccaaa 9274665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 215
Target Start/End: Original strand, 10371886 - 10371998
Alignment:
Q  103 gatttgaccaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatac 202  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||  |||||||||| ||||| |||| ||||||    
T  10371886 gatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatac 10371985  T
Q  203 aaagacagcctcc 215  Q
    ||||||| |||||    
T  10371986 aaagacaccctcc 10371998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 12006224 - 12006116
Alignment:
Q  111 caaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagacag 210  Q
    |||||||||||||||||||||||||||| || | ||||||||||||||||||||  ||||||| |||||||||| |||||||||||||| |||||||||     
T  12006224 caaagtaaaaagtttacaccaactatctttacaaccatattctttcatcacccatacatcaatcttagtagtttgataattcacaatcaaacaaagacac 12006125  T
Q  211 cctcccaaa 219  Q
    |||||||||    
T  12006124 cctcccaaa 12006116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 219
Target Start/End: Complemental strand, 12012667 - 12012544
Alignment:
Q  96 gaaacaagatttgaccaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaca 195  Q
    |||||| ||||  |||||||||||||||||||||||||||||| || | |||||||||||||||||| |  ||||||| |||||||||| || |||||||    
T  12012667 gaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcaca 12012568  T
Q  196 atcatacaaagacagcctcccaaa 219  Q
    |||||||||||||| |||||||||    
T  12012567 atcatacaaagacaccctcccaaa 12012544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 9315974 - 9316157
Alignment:
Q  30 ttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacac 129  Q
    |||||| | |||||||||||| ||||| ||||||||||||||| || ||    |||||  | ||  |||||| || || |||||||||||||||||||||    
T  9315974 ttccaatagaaccttacttccgtcactagaataacctaaaggcttcaaaaaattcaaagataaagtgaaacatgaattaaccaaagtaaaaagtttacac 9316073  T
Q  130 caactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagacagcctcccaaa 219  Q
    ||||||      |||||||| ||||||||||||||| ||||| |||||||||||| |||||||| ||||||||||||||| |||||||||    
T  9316074 caacta------gatccatagtctttcatcacccaaacatcagttttagtagtttgataattcaaaatcatacaaagacaccctcccaaa 9316157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 9364662 - 9364772
Alignment:
Q  109 accaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagac 208  Q
    ||||||||||| | |||||||||||||||| |  ||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| |||||    
T  9364662 accaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcatactaagac 9364761  T
Q  209 agcctcccaaa 219  Q
    | |||||||||    
T  9364762 accctcccaaa 9364772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 10347740 - 10347929
Alignment:
Q  30 ttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacac 129  Q
    |||||||| |||||||||||||||||| ||||||| ||  |||||| |   | ||||| || ||| |||||| || |   ||| ||||||||||||||||    
T  10347740 ttccaacagaaccttacttccatcactagaataacatatgggcctcaacaatttcaaaggtaaatcgaaacacgactcagccatagtaaaaagtttacac 10347839  T
Q  130 caactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagacagcctcccaaa 219  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||||||||  || |||||  ||| | ||||||||||| |||||||||    
T  10347840 caactatctctacatccatattctttcatgacccaaacatcaattttagtatctttataatcgacagtgatacaaagacaccctcccaaa 10347929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 12019074 - 12018880
Alignment:
Q  31 tccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacacc 130  Q
    ||||||| ||||||  |||||||||| |||||||||||||| ||| ||  | | ||| || ||  |||||| ||||  | ||||||||||||||||||||    
T  12019074 tccaacaaaaccttttttccatcactcgaataacctaaagggctcaaaaatctaaaaggtaaaacgaaacacgattccatcaaagtaaaaagtttacacc 12018975  T
Q  131 aactatctctagatccatattctttcatcacccaaccatcaattttagtagttt------cataattcacaatcatacaaagacagcctcccaaa 219  Q
    ||||||||||| ||||||||||||||||||||||| || | || |||||| |||       |||||||| ||||| ||||||||| |||||||||    
T  12018974 aactatctctacatccatattctttcatcacccaaacacctatcttagtaatttgatttcgataattcataatcaaacaaagacaccctcccaaa 12018880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 11987673 - 11987488
Alignment:
Q  31 tccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacacc 130  Q
    ||||||| ||||||  | |||||||| |||||||| ||||| ||| ||| | ||||| || ||  |||||| ||||  | ||| || |||||||||||||    
T  11987673 tccaacaaaacctttttaccatcactcgaataacccaaagggctcaaagatttcaaaggtaaaacgaaacacgattccatcaatgtgaaaagtttacacc 11987574  T
Q  131 aactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagacagcctcccaaa 219  Q
    ||||||||||| |||||||||||||||||||||||  |||||| ||||||   | || ||||||| ||| ||||||||| |||||||||    
T  11987573 aactatctctacatccatattctttcatcacccaaatatcaatcttagta---tgatgattcacagtcaaacaaagacaccctcccaaa 11987488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 7611974 - 7612057
Alignment:
Q  110 ccaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattca 193  Q
    |||||||||| | |||||||||||||||| |  ||||||||||||||||||||||| ||||||  ||| |||||||||||||||    
T  7611974 ccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaaacttaatagtttcataattca 7612057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 17566190 - 17566107
Alignment:
Q  110 ccaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattca 193  Q
    |||| ||||| | |||||||||| |||||||| ||||||||||||| ||||||||| ||||||  |||||||||| ||||||||    
T  17566190 ccaaggtaaacaatttacaccaattatctctaaatccatattctttaatcacccaaacatcaacattagtagtttgataattca 17566107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 8579592 - 8579522
Alignment:
Q  112 aaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagt 182  Q
    |||||||| | ||||||||||||||||||| ||||||||| ||||||||||||| | ||||  ||||||||    
T  8579592 aaagtaaacaatttacaccaactatctctaaatccatattttttcatcacccaaacctcaaccttagtagt 8579522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 8576451 - 8576411
Alignment:
Q  175 ttagtagtttcataattcacaatcatacaaagacagcctcc 215  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  8576451 ttagtagtttcataattcacactcatacaaagacaccctcc 8576411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 10335811 - 10335856
Alignment:
Q  30 ttccaacacaaccttacttccatcactggaataacctaaaggcctc 75  Q
    |||||| | ||||||||||||||||||  |||||||||||||||||    
T  10335811 ttccaatagaaccttacttccatcactacaataacctaaaggcctc 10335856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 4412 - 4619
Alignment:
Q  16 aaaatctcaattccttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaag 115  Q
    |||| |||||||||||| | || |||||||||||||||||| ||||||| |||||| ||||||| | |||||||||||  || ||| ||||| | || ||    
T  4412 aaaacctcaattccttcaatcagaaccttacttccatcactagaataacataaaggactcgaagatttcaaatgtgaagtgacacacgatttcatcatag 4511  T
Q  116 taaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagacagcctcc 215  Q
    ||||||||||||||||||||||| |  ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  4512 taaaaagtttacaccaactatcttttaatccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcc 4611  T
Q  216 caaagcag 223  Q
    ||||||||    
T  4612 caaagcag 4619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 28 - 219
Target Start/End: Original strand, 37462442 - 37462636
Alignment:
Q  28 ccttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttac 127  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||||| ||| | ||||| |||||  |||||| |||||  ||| |||| |||||||||    
T  37462442 ccttccaacaaaaccttacttccatcactagaataacataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttatccacagtacaaagtttac 37462541  T
Q  128 accaactatctctagatccatattctttcatcacccaaccatcaattttagtag---tttcataattcacaatcatacaaagacagcctcccaaa 219  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||   ||| |||||||||| |||||||||||||||||||||||    
T  37462542 accaactatctctagatccatattctttcatcacccaaacatcaaatttagtagtttttttataattcacagtcatacaaagacagcctcccaaa 37462636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 39427594 - 39427740
Alignment:
Q  29 cttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttg---accaaagtaaaaagttt 125  Q
    ||||||||| ||| ||||||| |||||||||||||| ||||||| || |||   | ||| |||||| ||||||  |||     || |||||||| | |||    
T  39427594 cttccaacagaactttacttctatcactggaataacataaaggcttcaaagacattaaaggtgaattgaaacaccattcccctacaaaagtaaacaattt 39427693  T
Q  126 acaccaactatctctagatccatattctttcatcacccaaccatcaa 172  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  39427694 acaccaactatatctatatccatattctttcatcacccaaacatcaa 39427740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 32 - 219
Target Start/End: Original strand, 45243656 - 45243843
Alignment:
Q  32 ccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacacca 131  Q
    |||||| ||| ||||||| |||||| ||||||| |||||||||| ||| |  ||||||  ||| |||||| ||||| |||||||||||||||||||||||    
T  45243656 ccaacagaactttacttcgatcactcgaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacacca 45243755  T
Q  132 actatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagacagcctcccaaa 219  Q
    | |||||||||| ||||||||||||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||  ||||||||    
T  45243756 aatatctctagaaccatattctttcatcacccaaacatcaatttcattagtttgataattcacaatcatacaaagacactctcccaaa 45243843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 51 - 209
Target Start/End: Original strand, 45230408 - 45230569
Alignment:
Q  51 atcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaactatctctagatccatat 150  Q
    |||||| ||||||| |||||| ||| ||| |  ||||||  ||| ||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  45230408 atcactcgaataacataaaggtctcaaagataccaaatgaaaattgaaccacgatttaaccaaagtaaaaagtttacaccaactatctctagaaccatat 45230507  T
Q  151 tctttcatcaccca---accatcaattttagtagtttcataattcacaatcatacaaagaca 209  Q
    ||||||||||||||   | ||||||||||| |||||| ||||||||||||||||||||||||    
T  45230508 tctttcatcacccaaacatcatcaattttattagtttgataattcacaatcatacaaagaca 45230569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 184
Target Start/End: Original strand, 45237907 - 45238059
Alignment:
Q  32 ccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacacca 131  Q
    |||||| ||| ||||||| ||| || ||||||| |||||||||| |   | ||| |||  ||| |||||| ||||  || ||||||||||||||||||||    
T  45237907 ccaacagaactttacttcgatcgcttgaataacataaaggcctcaacaatttcagatgaaaattgaaacacgattcaactaaagtaaaaagtttacacca 45238006  T
Q  132 actatctctagatccatattctttcatcacccaaccatcaattttagtagttt 184  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  45238007 actatctctagatccatattctttcatcacccaaacatcaatttgagtagttt 45238059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 209
Target Start/End: Complemental strand, 29443505 - 29443329
Alignment:
Q  33 caacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaa 132  Q
    ||||| |||| |||||| ||| || ||||||||||||  |||| ||||| ||||| || ||  |||||| ||||   ||||||||||||||||||||||     
T  29443505 caacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccag 29443406  T
Q  133 ctatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagaca 209  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||    
T  29443405 ctatctctacatccatattctttcatcacccaaacatcaattttagcagtttgataattcacaatcatacaaagaca 29443329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 29 - 219
Target Start/End: Complemental strand, 29453492 - 29453302
Alignment:
Q  29 cttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttaca 128  Q
    ||||||||| |||| |||||||||| || |||||| ||||||||| | ||| | ||||| || ||  |||||| ||||   ||||||||||||||| |||    
T  29453492 cttccaacagaaccatacttccatcgctcgaataagctaaaggccacaaagttttcaaaggtaaaatgaaacatgattccgccaaagtaaaaagttcaca 29453393  T
Q  129 ccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagacagcctcccaaa 219  Q
    ||| ||||||||| ||||||||||||||||||||||| |||||||||||  ||||| |||||||||||||||||||||||| ||| |||||    
T  29453392 ccagctatctctacatccatattctttcatcacccaaacatcaattttaacagtttgataattcacaatcatacaaagacacccttccaaa 29453302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 29 - 219
Target Start/End: Complemental strand, 29467968 - 29467778
Alignment:
Q  29 cttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttaca 128  Q
    |||| |||| |||| |||||||||| || |||||||||||||||||| ||| |  ||| ||| ||  |||||| ||| | |||||||||||||||||||     
T  29467968 cttcaaacagaaccatacttccatcgctcgaataacctaaaggcctcaaagattccaactgtaaagtgaaacacgatctaaccaaagtaaaaagtttacg 29467869  T
Q  129 ccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagacagcctcccaaa 219  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||| ||||||||||||||   ||||||| |||||||||    
T  29467868 ccaactatctctacatccatattctttcatcaaccaaacatcaattttactagtttgataattcacaatcaactaaagacaccctcccaaa 29467778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 206
Target Start/End: Original strand, 29423223 - 29423396
Alignment:
Q  33 caacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaa 132  Q
    ||||| |||| ||| |||||| || |||||| ||||| ||||| ||||| ||||| || |   |||||| ||||   ||||||||||||||||||||||     
T  29423223 caacagaaccatacctccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccag 29423322  T
Q  133 ctatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaag 206  Q
    ||||||||| |||||||||||||||||| |||| |||||||||||  ||||| |||||||||| ||||||||||    
T  29423323 ctatctctacatccatattctttcatcagccaaacatcaattttaacagtttgataattcacagtcatacaaag 29423396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 219
Target Start/End: Complemental strand, 41966898 - 41966703
Alignment:
Q  24 aattccttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagt 123  Q
    |||||||| ||||| |||||| |||||||| || ||| ||||||||  || | | | | |||||  ||||  |||||||||||| |||||||||||||||    
T  41966898 aattccttgcaacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagt 41966799  T
Q  124 ttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcacaatcatacaaagacagcctcccaaa 219  Q
    |||||||| ||||||||||||| ||||||||||||||||||| ||||||  |   |||||| ||||| ||||| |||||||||||| |||||||||    
T  41966798 ttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcgctagtttgataatccacaaccatacaaagacaccctcccaaa 41966703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 26574882 - 26575001
Alignment:
Q  96 gaaacaagatttgaccaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaca 195  Q
    |||||| ||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||  || ||||| ||||    
T  26574882 gaaacacgatttaaccacagtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaacatcaattttagtatctttataatccaca 26574981  T
Q  196 atcatacaaagacagcctcc 215  Q
     ||||||||||||| |||||    
T  26574982 gtcatacaaagacaccctcc 26575001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 561273 - 561340
Alignment:
Q  126 acaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattca 193  Q
    |||||||||||||||| |||||||||||||||| |||||| ||||||  |||||||||| || |||||    
T  561273 acaccaactatctctaaatccatattctttcattacccaaacatcaaccttagtagttttattattca 561340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 36224454 - 36224532
Alignment:
Q  111 caaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataa 189  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||| |||||    
T  36224454 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaaatttattagttccataa 36224532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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