View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_129 (Length: 244)
Name: NF15962_low_129
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_129 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 8939638 - 8939401
Alignment:
| Q |
1 |
tccaataatatgtataatgaggtaaaaatgacaatacttgcgtttgattaccgtattttgcagggttttaaactaactgcgataatgaagtgtaaatatc |
100 |
Q |
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| T |
8939638 |
tccaataatatgtataatgaggtaaaaatgacaatacttgcttttgattaccgtattttgcagggttttgaactaactgcgataatgaagtgtaaatatc |
8939539 |
T |
|
| Q |
101 |
aaggtagacaagcttagcttctggaaatttattttcaaaggcatccatttgagatactaatttggagttgaagagtcttgctgcttggttttcaaaatct |
200 |
Q |
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| T |
8939538 |
aaggtagacaagcttagcttctggaaatttattttcaaaggcatccattttagatactaatttggagttgaagagtcttgctgcttggttttcaaaatct |
8939439 |
T |
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| Q |
201 |
gaacatcctctttcaatgcctcctccaattgttctctg |
238 |
Q |
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| T |
8939438 |
gaacatcctctttcaatgcctcctccaattgttctctg |
8939401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 91 - 238
Target Start/End: Complemental strand, 8947081 - 8946934
Alignment:
| Q |
91 |
tgtaaatatcaaggtagacaagcttagcttctggaaatttattttcaaaggcatccatttgagatactaatttggagttgaagagtcttgctgcttggtt |
190 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||| |||| ||| |
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| T |
8947081 |
tgtaaatatcaaggtagacaagcttagcctctggaaatttattttcaaaggcatccatttgagatactagtttggagttgaagactattgcagcttcgtt |
8946982 |
T |
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| Q |
191 |
ttcaaaatctgaacatcctctttcaatgcctcctccaattgttctctg |
238 |
Q |
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| T |
8946981 |
ttctaaacctgaacagtgtctatacattcctcctccaattgttctctg |
8946934 |
T |
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