View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_130 (Length: 243)
Name: NF15962_low_130
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_130 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 3085443 - 3085218
Alignment:
| Q |
18 |
gcaagtgggtgattcacattgaacgcataacaagggagaaggtgaatggatccaccgttaatgttggtgttaatccttcaaaggttgttatcactaagct |
117 |
Q |
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| T |
3085443 |
gcaagtgggtgattcacattgaacgcatcacaagggagaaggtgaatggatccaccgttaatgttggtgttaatccttcaaaggttgttatcactaagct |
3085344 |
T |
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| Q |
118 |
cagattggataaggatcgtaagtctcttcttgatcgtaaggctaagggtcgtgctgctgctgataaggagaagggtactaagtttgctcctgaggatatt |
217 |
Q |
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| T |
3085343 |
cagattggataaggatcgtaagtcgcttcttgatcgtaaggctaagggtcgtgctgctgctgataaggagaagggtactaagtttgctcctgaggatatt |
3085244 |
T |
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| Q |
218 |
atgcagaccgttgattagggttcttc |
243 |
Q |
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| T |
3085243 |
atgcagaccgttgattagggttcttc |
3085218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 42219716 - 42219506
Alignment:
| Q |
23 |
tgggtgattcacattgaacgcataacaagggagaaggtgaatggatccaccgttaatgttggtgttaatccttcaaaggttgttatcactaagctcagat |
122 |
Q |
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| T |
42219716 |
tgggttattcatattgaacgtattactcgtgagaaagttaatggttctactgttaatgttggtgttgatccttccaaagttgttgttactaagctgagat |
42219617 |
T |
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| Q |
123 |
tggataaggatcgtaagtctcttcttgatcgtaaggctaagggtcgtgctgctgctgataaggagaagggtactaagtttgctcctgaggatattatgca |
222 |
Q |
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| T |
42219616 |
tggataaggataggaagtcgttgcttgagaggaaggcgaagggacgtgctgccgctgataaggagaagggtactaagtttggtgctgaagatattatgca |
42219517 |
T |
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| Q |
223 |
gaccgttgatt |
233 |
Q |
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| T |
42219516 |
gaatgttgatt |
42219506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 5404414 - 5404625
Alignment:
| Q |
23 |
tgggtgattcacattgaacgcataacaagggagaaggtgaatggatccaccgttaatgttggtgttaatccttcaaaggttgttatcactaagctcagat |
122 |
Q |
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| T |
5404414 |
tgggtgattcatattgagaggattacacgtgagaaggtgaatggtcaaactgtgaatgttggtgttgatccttcaaaggttgtgattactaagattcgtt |
5404513 |
T |
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| Q |
123 |
tggataaggatcgtaagtctcttcttgatcgtaaggctaagggtcgtgctgctgctgataaggagaagggtactaagtttgctcctgaggatattatgca |
222 |
Q |
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| T |
5404514 |
tggacaaggataggaaaagcttgcttgatcgtaaggcgaagggtcgtgctgctgctgataaggaaaagggtaccaagtttgctcctgaagacattatgca |
5404613 |
T |
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| Q |
223 |
gaccgttgatta |
234 |
Q |
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| T |
5404614 |
aaacgttgatta |
5404625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 2468730 - 2468819
Alignment:
| Q |
146 |
cttgatcgtaaggctaagggtcgtgctgctgctgataaggagaagggtactaagtttgctcctgaggatattatgcagaccgttgattag |
235 |
Q |
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| T |
2468730 |
cttgatcgtaaggcgaagggtcgtgctgttgctgatagggaaaagggtaccaagttttctcctgaagacattatgcaaaacgttgattag |
2468819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 30927021 - 30926983
Alignment:
| Q |
77 |
aatgttggtgttaatccttcaaaggttgttatcactaag |
115 |
Q |
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| T |
30927021 |
aatgttggtgttaatccttcaaaggttgtgattactaag |
30926983 |
T |
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Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 39953 - 39889
Alignment:
| Q |
168 |
gtgctgctgctgataaggagaagggtactaagtttgctcctgaggatattatgcagaccgttgattag |
235 |
Q |
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| T |
39953 |
gtgctgccgctgataaggag---ggtaccaagtttgctcctgaagacattatgcaaaacgttgattag |
39889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 27447405 - 27447469
Alignment:
| Q |
168 |
gtgctgctgctgataaggagaagggtactaagtttgctcctgaggatattatgcagaccgttgattag |
235 |
Q |
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| T |
27447405 |
gtgctgccgctgataaggag---ggtaccaagtttgctcctgaagacattatgcaaaacgttgattag |
27447469 |
T |
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