View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_135 (Length: 237)
Name: NF15962_low_135
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_135 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 2600516 - 2600316
Alignment:
| Q |
1 |
gaatataacaactaactatgtacagtagaaattcctagtgnnnnnnnggtagttaataaattcctagtgtttaacaaccactaaatattttagtcaacaa |
100 |
Q |
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| T |
2600516 |
gaatataacaactaactatgtacagtagaaattcctggtgttttttttgtagttaataaattcctagtgtttaacaaccactaaatattttagtcaacaa |
2600417 |
T |
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| Q |
101 |
tttaaaaaagctaccaagacatgaaaccatttttacacaagcttacaaatatccaagtgaaacgttatcaataccaaactctcttccacttcagacctcc |
200 |
Q |
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| T |
2600416 |
tttaaaaaagctaccaagacatgaaaccatttttacacaagcttacaaatatccaagtgaaacgttatcaataccaatctctcttccacttcagacctcc |
2600317 |
T |
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| Q |
201 |
a |
201 |
Q |
| |
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| |
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| T |
2600316 |
a |
2600316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 2592622 - 2592511
Alignment:
| Q |
116 |
aagacatgaaaccatttttacacaagct----tacaaatatccaagtgaaacgttatcaataccaaactctcttccacttcagacctccaaagattgaac |
211 |
Q |
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|||| ||||||||||||||||||||||| || ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2592622 |
aagatatgaaaccatttttacacaagctagcttagaaaagtccaaatgaaacgttatcaataccaaactctcttccacttcagacctccaaggattgaac |
2592523 |
T |
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| Q |
212 |
ctcaaaactttg |
223 |
Q |
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|||||||||||| |
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| T |
2592522 |
ctcaaaactttg |
2592511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 85 - 190
Target Start/End: Complemental strand, 2579060 - 2578954
Alignment:
| Q |
85 |
atattttagtcaacaatttaaaaaagctaccaagacatgaaaccatttttacacaagcttacaaa--ta---tccaagtgaaacgttatcaataccaaac |
179 |
Q |
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|||||||||||||||| ||||| | || |||| |||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
2579060 |
atattttagtcaacaa----aaaaaacaactaagatatgaaaccatcattacacaagcttacaaaattaaagtccaagtgaaacgttatcaataccaaac |
2578965 |
T |
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| Q |
180 |
tctcttccact |
190 |
Q |
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||||||||||| |
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| T |
2578964 |
tctcttccact |
2578954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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