View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_139 (Length: 236)
Name: NF15962_low_139
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_139 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 18231647 - 18231426
Alignment:
| Q |
1 |
atctatttcagaaacattttggaatttgatgaatttctccctataatttacaattgcacaaacatcagaaatgactacgacataagttagacaccggaca |
100 |
Q |
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| T |
18231647 |
atctatttcagtaacattttggaacttgatgaatttctccctataatttacaattgcacaaacatcagaaatgactacgacataagttagacaccggaca |
18231548 |
T |
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| Q |
101 |
caccttcaaaccaatgtgtttgtcctgctaaattcccaatcaaatcctctcatggaacacaagagaccttgataaagctacaggattagcttgcaaaact |
200 |
Q |
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| T |
18231547 |
caccttcaaaccaatgtgtttgtcctgctaaattcccaatcaaatcctctcatggaacacaagagaccttgataaagctacaggattagcttgcaaaact |
18231448 |
T |
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| Q |
201 |
gatgaggatgtttgtacatgat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
18231447 |
gatgaggatgtttgtacatgat |
18231426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 18194120 - 18194060
Alignment:
| Q |
132 |
attcccaatcaaatcctctcatggaacacaagagaccttgataaagctacaggattagctt |
192 |
Q |
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| T |
18194120 |
attcccaatcaaatcctctcatgaaacacaagagaccttgataaagctgcaggattggctt |
18194060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 18188879 - 18188805
Alignment:
| Q |
132 |
attcccaatcaaatcctctcatggaacacaagagaccttgataaagctacaggattagcttgcaaaactgatgag |
206 |
Q |
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| T |
18188879 |
attcacaatcaaatcatctcgcggaacacaaaagaccttgataaagctgcaggattggctttcaatactgatgag |
18188805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 18198719 - 18198662
Alignment:
| Q |
132 |
attcccaatcaaatcctctcatggaacacaagagaccttgataaagctacaggattag |
189 |
Q |
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||||| ||||||||| |||||||||||| ||| ||||||||||||||| |||| |||| |
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| T |
18198719 |
attccaaatcaaatcatctcatggaacaaaagtgaccttgataaagctgcagggttag |
18198662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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