View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_low_140 (Length: 236)

Name: NF15962_low_140
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_low_140
NF15962_low_140
[»] chr5 (3 HSPs)
chr5 (1-221)||(8939767-8939987)
chr5 (70-160)||(33155589-33155679)
chr5 (102-146)||(2818988-2819032)
[»] chr8 (7 HSPs)
chr8 (59-219)||(33474216-33474378)
chr8 (70-154)||(6863048-6863132)
chr8 (46-152)||(7664008-7664114)
chr8 (56-107)||(13921204-13921255)
chr8 (56-174)||(3795343-3795460)
chr8 (46-184)||(29264536-29264674)
chr8 (70-160)||(34018225-34018315)
[»] chr1 (3 HSPs)
chr1 (46-217)||(41625470-41625643)
chr1 (70-149)||(7890387-7890466)
chr1 (98-152)||(27925360-27925414)
[»] chr4 (4 HSPs)
chr4 (56-128)||(51079059-51079131)
chr4 (99-144)||(8482372-8482417)
chr4 (103-192)||(15835312-15835400)
chr4 (40-112)||(56127355-56127427)
[»] chr6 (4 HSPs)
chr6 (68-162)||(27598160-27598254)
chr6 (73-144)||(13587603-13587674)
chr6 (102-152)||(12329717-12329767)
chr6 (41-105)||(11620257-11620321)
[»] chr3 (2 HSPs)
chr3 (72-190)||(52416382-52416500)
chr3 (74-131)||(40285439-40285496)
[»] chr7 (2 HSPs)
chr7 (99-137)||(46981398-46981436)
chr7 (194-222)||(39611625-39611653)
[»] chr2 (1 HSPs)
chr2 (72-141)||(42206094-42206163)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8939767 - 8939987
Alignment:
Q  1 agatcaattcaaattcatttgcatcttcatatatagagtaaggctaagtctattctgcacaaggaagttaagtcttgcaccatgcacaaagttgttgcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8939767 agatcaattcaaattcatttgcatcttcatatatagagtaaagctaagtctattctgcacaaggaagttaagtcttgcaccatgcacaaagttgtttcca 8939866  T
Q  101 ccattggatcaataagtttcaccattaaattaattgaaatatgatgtgatttttggatccaacgatagaaagtaaacttgtgcatagtgcaaataattta 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  8939867 ccattggatcaataagtttcaccgttaaattaattgaaatatgatgtgatttttggatccaacgatagaaagtaaacttgtgcattgtgcaagtaattta 8939966  T
Q  201 cttgtgcatgttagacaaaac 221  Q
    |||||||||||||||||||||    
T  8939967 cttgtgcatgttagacaaaac 8939987  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 33155679 - 33155589
Alignment:
Q  70 aagtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaattgaaatatgatgtgatttttggatcc 160  Q
    |||||||||| |||||||||  | |||  ||||||||||||||||| |  |||||||||||||| ||| | ||||| ||| |||| |||||    
T  33155679 aagtcttgcatcatgcacaagctagttttcaccattggatcaataaatcccaccattaaattaaatgagaaatgatttgactttttgatcc 33155589  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 2818988 - 2819032
Alignment:
Q  102 cattggatcaataagtttcaccattaaattaattgaaatatgatg 146  Q
    |||||||||||||| | ||||||||| ||||| ||||||||||||    
T  2818988 cattggatcaataaatctcaccattagattaaatgaaatatgatg 2819032  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 219
Target Start/End: Original strand, 33474216 - 33474378
Alignment:
Q  59 acaaggaagttaagtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaattgaaatatgatgtgatttttggat 158  Q
    ||||||||| ||||||||||| |||| |||| ||||||  ||||||| ||||||||||||||||||||||||||| | |||||| |||| |||| |  ||    
T  33474216 acaaggaagataagtcttgcatcatgtacaaggttgttttcaccatttgatcaataagtttcaccattaaattaaataaaatataatgtaatttataaat 33474315  T
Q  159 ccaacgatagaaagtaaacttgtgcatagtgcaaa--taatttacttgtgcatgttagacaaa 219  Q
    |||| | || || ||  |||||||||| |||||||  ||||| |||| |||||||||||||||    
T  33474316 ccaatgctaaaatgtcgacttgtgcatggtgcaaaagtaattaacttatgcatgttagacaaa 33474378  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 6863048 - 6863132
Alignment:
Q  70 aagtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaattgaaatatgatgtgattttt 154  Q
    |||||||||| ||| |||||  | ||| |||||||||||||||||| | ||||||||||||||| ||||||||||||||| ||||    
T  6863048 aagtcttgcatcatacacaagctagtttccaccattggatcaataaatctcaccattaaattaaatgaaatatgatgtgactttt 6863132  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 7664114 - 7664008
Alignment:
Q  46 aagtctattctgcacaaggaagttaagtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaattgaaatatgat 145  Q
    ||||||||  |||||||| |||  |||||||||||||||||  ||| | || | |||||| |||||| || | || |||||||||||| |||||||||||    
T  7664114 aagtctatgatgcacaagaaaggaaagtcttgcaccatgcatcaagctatttcaaccattagatcaaaaaatctccccattaaattaaatgaaatatgat 7664015  T
Q  146 gtgattt 152  Q
    || ||||    
T  7664014 gtaattt 7664008  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 13921255 - 13921204
Alignment:
Q  56 tgcacaaggaagttaagtcttgcaccatgcacaaagttgttgccaccattgg 107  Q
    |||||||||| | |||||||||||||||| |||| |||||| ||||||||||    
T  13921255 tgcacaaggatgataagtcttgcaccatgtacaaggttgtttccaccattgg 13921204  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 3795343 - 3795460
Alignment:
Q  56 tgcacaaggaagttaagtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaattgaaatatgatgtgatttttg 155  Q
    |||||||||| |  ||||| |||| ||||||||| |||||| ||| |||||||| |||||||||||| | ||| |||| | ||||||  |||||||| |     
T  3795343 tgcacaaggatgagaagtcatgcaacatgcacaatgttgtttccaacattggat-aataagtttcacaagtaagttaaattaaatatattgtgatttatt 3795441  T
Q  156 gatccaacgatagaaagta 174  Q
    |||| ||  ||||||||||    
T  3795442 gatcgaatcatagaaagta 3795460  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 29264536 - 29264674
Alignment:
Q  46 aagtctattctgcacaaggaagttaagtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaattgaaatatgat 145  Q
    ||||||||  |||||| || | ||| |||||||||||||||||| || |||   |||| ||||||||||||  |||  |||||||||| | ||||||| |    
T  29264536 aagtctatggtgcacacgggacttacgtcttgcaccatgcacaatgtggtttttaccactggatcaataaggctcaatattaaattaaattaaatatggt 29264635  T
Q  146 gtgatttttggatccaacgatagaaagtaaacttgtgca 184  Q
    | ||||| | ||||||| | | | || ||||||||||||    
T  29264636 gagatttattgatccaatggtggcaaataaacttgtgca 29264674  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 34018315 - 34018225
Alignment:
Q  70 aagtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaattgaaatatgatgtgatttttggatcc 160  Q
    |||||||||| |||||||||  | |||   |||||||||||||||| || |||||||||||||| ||| | ||||| ||| |||| |||||    
T  34018315 aagtcttgcatcatgcacaagctagtttttaccattggatcaataaattccaccattaaattaaatgagaaatgatttgactttttgatcc 34018225  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 217
Target Start/End: Original strand, 41625470 - 41625643
Alignment:
Q  46 aagtctattctgcacaaggaagttaagtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaattgaaatatgat 145  Q
    ||||||||  |||||| | ||| |||||||||||||||||||||  || || |||||||| ||||||||| |||||| |||||||||| | |||||||||    
T  41625470 aagtctatggtgcacatgcaagataagtcttgcaccatgcacaagattctttccaccattagatcaataaatttcactattaaattaaataaaatatgat 41625569  T
Q  146 gtgatttttggatccaacgatagaaagtaaacttgtgcatagtgcaaa--taatttacttgtgcatgttagaca 217  Q
    | ||||  | ||||||| | |||||| || ||||||  || |||||||  |||||| ||| |||||||||||||    
T  41625570 gagattcattgatccaatggtagaaaatagacttgtatatggtgcaaaagtaatttgcttatgcatgttagaca 41625643  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 7890387 - 7890466
Alignment:
Q  70 aagtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaattgaaatatgatgtga 149  Q
    |||| ||||| |||||||||||| |||  ||| ||||||||||||| ||||||||||||||||| |||||||||||||||    
T  7890387 aagtattgcatcatgcacaaagtagttttcactattggatcaataaatttcaccattaaattaaatgaaatatgatgtga 7890466  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 27925414 - 27925360
Alignment:
Q  98 ccaccattggatcaataagtttcaccattaaattaattgaaatatgatgtgattt 152  Q
    |||||||||||||||||| |||||  ||||||| || ||| ||||||||||||||    
T  27925414 ccaccattggatcaataaatttcatgattaaataaaatgagatatgatgtgattt 27925360  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 51079059 - 51079131
Alignment:
Q  56 tgcacaaggaagttaagtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaa 128  Q
    |||||||| ||| ||||||||||||||||||||| |||||| |||| ||||||||||||| || ||| |||||    
T  51079059 tgcacaagcaagataagtcttgcaccatgcacaaggttgtttccactattggatcaataaattccactattaa 51079131  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 8482372 - 8482417
Alignment:
Q  99 caccattggatcaataagtttcaccattaaattaattgaaatatga 144  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  8482372 caccattggttcaataaatttcaccattaaattaaatgaaatatga 8482417  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 192
Target Start/End: Complemental strand, 15835400 - 15835312
Alignment:
Q  103 attggatcaataagtttcaccattaaattaattgaaatatgatgtgatttttggatccaacgatagaaagtaaacttgtgcatagtgcaa 192  Q
    ||||||||||||| |||||| ||||| | || | |||||||||| || |||| |||| || |||| ||| ||||||||||||| ||||||    
T  15835400 attggatcaataaatttcacgattaagtgaaataaaatatgatgcgactttttgatctaatgata-aaaataaacttgtgcatggtgcaa 15835312  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 56127355 - 56127427
Alignment:
Q  40 aaggctaagtctattctgcacaaggaagttaagtcttgcaccatgcacaaagttgttgccaccattggatcaa 112  Q
    ||||| ||||||||  ||||||||  ||  ||||||||||||||||||||| |||||  ||||||||| ||||    
T  56127355 aaggccaagtctatggtgcacaagtgagacaagtcttgcaccatgcacaaacttgttttcaccattggttcaa 56127427  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 27598160 - 27598254
Alignment:
Q  68 ttaagtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaattgaaatatgatgtgatttttggatccaa 162  Q
    |||||||||||||||||||||| || |||   |||||||||||||||||  |||  |||||||||| ||||||||| || ||||| | |||||||    
T  27598160 ttaagtcttgcaccatgcacaacgtggtttttaccattggatcaataaggctcagtattaaattaaatgaaatatggtgagatttattgatccaa 27598254  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 13587603 - 13587674
Alignment:
Q  73 tcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaattgaaatatga 144  Q
    |||||||||||||| || |||||| | |||||||||||||||| | |||| |||||||| | ||||||||||    
T  13587603 tcttgcaccatgcataaggttgtttctaccattggatcaataaatctcactattaaattgaatgaaatatga 13587674  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 12329717 - 12329767
Alignment:
Q  102 cattggatcaataagtttcaccattaaattaattgaaatatgatgtgattt 152  Q
    ||||| |||||||| ||||||||||||||||||||| |||| |||||||||    
T  12329717 cattgaatcaataaatttcaccattaaattaattgagatattatgtgattt 12329767  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 11620321 - 11620257
Alignment:
Q  41 aggctaagtctattctgcacaaggaagttaagtcttgcaccatgcacaaagttgttgccaccatt 105  Q
    |||| ||||||||  | |||||||||| |||||||||| ||||||||||||| |||  |||||||    
T  11620321 aggccaagtctatggttcacaaggaagataagtcttgcgccatgcacaaagtcgttttcaccatt 11620257  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 190
Target Start/End: Original strand, 52416382 - 52416500
Alignment:
Q  72 gtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaattgaaatatgatgtgatttttggatccaacgatagaaa 171  Q
    ||||||||||||||||| | ||||| ||||||||||||||||||||   ||| ||  || |||||  || |||||||| || | ||| ||||| ||||||    
T  52416382 gtcttgcaccatgcacatacttgtttccaccattggatcaataagtcgtacccttggatcaattgtgatttgatgtgacttgttgattcaacggtagaaa 52416481  T
Q  172 gtaaacttgtgcatagtgc 190  Q
      |||||||||||| ||||    
T  52416482 acaaacttgtgcatggtgc 52416500  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 40285496 - 40285439
Alignment:
Q  74 cttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaatt 131  Q
    |||||||||||||||||||||||   || ||| ||||||||||| |||| ||||||||    
T  40285496 cttgcaccatgcacaaagttgtttatacaatttgatcaataagtctcactattaaatt 40285439  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 46981436 - 46981398
Alignment:
Q  99 caccattggatcaataagtttcaccattaaattaattga 137  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  46981436 caccattggatcaataatttacaccattaaattaattga 46981398  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 39611653 - 39611625
Alignment:
Q  194 taatttacttgtgcatgttagacaaaact 222  Q
    |||||||||||||||||||||||||||||    
T  39611653 taatttacttgtgcatgttagacaaaact 39611625  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 42206094 - 42206163
Alignment:
Q  72 gtcttgcaccatgcacaaagttgttgccaccattggatcaataagtttcaccattaaattaattgaaata 141  Q
    |||||||||||||||||| ||| || | |||| | |||||||||||  |||| ||||||||| |||||||    
T  42206094 gtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaata 42206163  T

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