View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_low_142 (Length: 235)

Name: NF15962_low_142
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_low_142
NF15962_low_142
[»] chr8 (1 HSPs)
chr8 (1-234)||(41966704-41966937)
[»] chr2 (23 HSPs)
chr2 (40-234)||(8573504-8573698)
chr2 (112-234)||(9065592-9065714)
chr2 (119-231)||(10371886-10371998)
chr2 (53-231)||(9284192-9284370)
chr2 (100-234)||(9061140-9061274)
chr2 (49-231)||(10353067-10353249)
chr2 (49-234)||(9328557-9328742)
chr2 (113-234)||(10335866-10335987)
chr2 (49-231)||(9291901-9292077)
chr2 (49-189)||(9320940-9321080)
chr2 (106-234)||(16269104-16269232)
chr2 (99-234)||(7115641-7115776)
chr2 (53-234)||(9315981-9316156)
chr2 (127-234)||(12006117-12006224)
chr2 (112-234)||(12012545-12012667)
chr2 (125-234)||(9364662-9364771)
chr2 (127-234)||(9274557-9274664)
chr2 (49-234)||(10347743-10347928)
chr2 (127-184)||(12018937-12018994)
chr2 (126-206)||(17566110-17566190)
chr2 (134-188)||(11987532-11987586)
chr2 (126-188)||(7611974-7612036)
chr2 (128-189)||(8579531-8579592)
[»] chr1 (4 HSPs)
chr1 (45-229)||(29443325-29443509)
chr1 (49-234)||(29453303-29453488)
chr1 (50-234)||(29467779-29467963)
chr1 (45-229)||(29423219-29423403)
[»] chr7 (3 HSPs)
chr7 (111-234)||(45243719-45243842)
chr7 (119-226)||(45230460-45230570)
chr7 (111-188)||(45237970-45238047)
[»] chr3 (2 HSPs)
chr3 (44-188)||(37462442-37462586)
chr3 (128-188)||(39427680-39427740)
[»] chr4 (2 HSPs)
chr4 (112-231)||(26574882-26575001)
chr4 (142-189)||(561273-561320)
[»] scaffold0667 (1 HSPs)
scaffold0667 (52-234)||(4432-4614)
[»] chr5 (1 HSPs)
chr5 (127-188)||(36224454-36224515)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 41966937 - 41966704
Alignment:
Q  1 ttcactcttcaaatcataccaaaacagtttcgaatcattaattccttgcaacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttc 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966937 ttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttc 41966838  T
Q  101 aaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41966837 aaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcgctagttt 41966738  T
Q  201 gataatccacaaccatacaaagacaccctcccaa 234  Q
    ||||||||||||||||||||||||||||||||||    
T  41966737 gataatccacaaccatacaaagacaccctcccaa 41966704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 40 - 234
Target Start/End: Complemental strand, 8573698 - 8573504
Alignment:
Q  40 aattccttgcaacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagt 139  Q
    |||||||| |||||||||||| |||||||| |||||| ||||||||  || | | ||||| |||  || ||||||||| |||||||| ||||||||||||    
T  8573698 aattccttccaacagaaccttacttccatcactagaataacctaaaggcctcgaagatttaaaatgtggagtgaaacacgatttaacgaaagtaaaaagt 8573599  T
Q  140 ttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcccaa 234  Q
    |||||||| ||||||||||| | ||||||||||||||||||||||||||  ||| | |||| ||||| ||||  ||||||||||||||| |||||    
T  8573598 ttacaccaactatctctagaaccatattctttcatcacccaaacatcaatttcagtggtttcataattcacagacatacaaagacacccacccaa 8573504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 9065714 - 9065592
Alignment:
Q  112 gaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccaca 211  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| || | |||||| ||||| || |    
T  9065714 gaaacaagatttgaccaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaatattagtagtttcataattcaaa 9065615  T
Q  212 accatacaaagacaccctcccaa 234  Q
    | |||||||||||||||||||||    
T  9065614 atcatacaaagacaccctcccaa 9065592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 231
Target Start/End: Original strand, 10371886 - 10371998
Alignment:
Q  119 gatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatac 218  Q
    ||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||| |||||| | | |||||| ||||||||||  |||||    
T  10371886 gatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatac 10371985  T
Q  219 aaagacaccctcc 231  Q
    |||||||||||||    
T  10371986 aaagacaccctcc 10371998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 231
Target Start/End: Complemental strand, 9284370 - 9284192
Alignment:
Q  53 agaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctat 152  Q
    |||||||| || ||||| |||||| ||||||||  || ||| |||||||||  | ||||||| |  ||||||||||||||||||| ||||||||| ||||    
T  9284370 agaaccttactaccatcactagaataacctaaaggcctcaaagatttcaaacgtaaagtgaaccgtgatttaaccaaagtaaaaattttacaccaactat 9284271  T
Q  153 ctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcc 231  Q
    ||||||| | ||||||||||||||||||||| ||||  | | |||||||||||| ||||| ||||| |||||| |||||    
T  9284270 ctctagaaccatattctttcatcacccaaacgtcaattttagtagtttgataattcacaatcatactaagacaacctcc 9284192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 100 - 234
Target Start/End: Complemental strand, 9061274 - 9061140
Alignment:
Q  100 caaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtt 199  Q
    ||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||  | | ||| |    
T  9061274 caaaggtgaattgaaacacgatttaaccaaagtaaaaagtttacaccaactatctctagatccatagtctttcatcacccaaacatcaattttagtagct 9061175  T
Q  200 tgataatccacaaccatacaaagacaccctcccaa 234  Q
    | ||||| ||||  ||| ||||||||||| |||||    
T  9061174 tcataattcacagacatgcaaagacacccacccaa 9061140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 231
Target Start/End: Original strand, 10353067 - 10353249
Alignment:
Q  49 caacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccag 148  Q
    ||||| ||||||  ||| ||| || ||| ||||||||| || ||| |||| ||||| | ||  |||| |||||||||||| ||||||||||||||||||     
T  10353067 caacaaaaccttttttctatcactcgaataacctaaaagcctcaaagattgcaaaggtaaatcgaaagaagatttaaccacagtaaaaagtttacaccaa 10353166  T
Q  149 ctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcc 231  Q
    || |||||| ||| ||||||||||||||||||||||||||  | | ||  || ||||||||||| ||||||||||||||||||    
T  10353167 ctctctctacatccatattctttcatcacccaaacatcaattttagtatctttataatccacaatcatacaaagacaccctcc 10353249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 234
Target Start/End: Original strand, 9328557 - 9328742
Alignment:
Q  49 caacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccag 148  Q
    ||||| ||||||  ||||||| ||  || ||||||||  || ||| |||||||||| | ||  |||||| |||||||||| ||||||||||||||||||     
T  9328557 caacaaaaccttttttccatcactcaaataacctaaaggcctcaaagatttcaaaggtaaatggaaacacgatttaaccatagtaaaaagtttacaccaa 9328656  T
Q  149 ctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcccaa 234  Q
    ||||||||| ||| ||||| ||||||||||||||||||||  ||| |||||| ||||| || |  ||| |||||||||||||||||    
T  9328657 ctatctctatatccatattgtttcatcacccaaacatcaatttcagtagtttcataattcaaagtcatgcaaagacaccctcccaa 9328742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 10335866 - 10335987
Alignment:
Q  113 aaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaa 212  Q
    ||||| |||||||||||||||||| |||||||||| ||||||||| | | ||||||||||||||||||||||||||  | | |||||||||||| ||||     
T  10335866 aaacacgatttaaccaaagtaaaatgtttacaccaactatctctacagccatattctttcatcacccaaacatcaattttagtagtttgataattcacag 10335965  T
Q  213 ccatacaaagacaccctcccaa 234  Q
     || ||||||||||||||||||    
T  10335966 gcaaacaaagacaccctcccaa 10335987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 49 - 231
Target Start/End: Original strand, 9291901 - 9292077
Alignment:
Q  49 caacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccag 148  Q
    |||||||||||| |||||||| |||||| ||| ||||  || ||| ||||||||||      |||| |  |||||||||||||||||||||||||||||     
T  9291901 caacagaaccttacttccatccctagaataacataaaggcctcaaagatttcaaag------tgaaccgcgatttaaccaaagtaaaaagtttacaccaa 9291994  T
Q  149 ctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcc 231  Q
    ||||||||||| | ||||| ||||||||||||||||||||  | | |||||| ||||| ||||  ||||||||||||| ||||    
T  9291995 ctatctctagaaccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacactctcc 9292077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 189
Target Start/End: Original strand, 9320940 - 9321080
Alignment:
Q  49 caacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccag 148  Q
    ||||| ||||||  ||||||| || ||| ||||||||  || ||| |||||||||| | ||  | |||| |||||||||| ||||||||||||||||||     
T  9320940 caacaaaaccttttttccatcactcgaataacctaaaggcctcaaagatttcaaaggtaaatcgtaacacgatttaaccatagtaaaaagtttacaccaa 9321039  T
Q  149 ctatctctagatcgatattctttcatcacccaaacatcaac 189  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  9321040 ctatctctagaaccatattctttcatcacccaaacatcaac 9321080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 234
Target Start/End: Original strand, 16269104 - 16269232
Alignment:
Q  106 tgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataa 205  Q
    |||||||||||| ||||||||||| ||||||||||| ||||| ||||||||| ||| ||| ||||||||||||||||||||||  | | |||||| ||||    
T  16269104 tgaagtgaaacacgatttaaccaaggtaaaaagtttgcaccaactatctctatatccatactctttcatcacccaaacatcaattttagtagtttcataa 16269203  T
Q  206 tccacaaccatacaaagacaccctcccaa 234  Q
    | ||||   ||||||||||| ||||||||    
T  16269204 ttcacagttatacaaagacatcctcccaa 16269232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 234
Target Start/End: Complemental strand, 7115776 - 7115641
Alignment:
Q  99 tcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagt 198  Q
    |||||||| ||  |||||| || |||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||    | | ||||    
T  7115776 tcaaagataaatcgaaacacgaattaaccaatgtaaaaagtttacaccagctgtctctagatccatattgtttcatcacccaaacatctgttttagtagt 7115677  T
Q  199 ttgataatccacaaccatacaaagacaccctcccaa 234  Q
    |  ||||| ||||| |||||||||||||||||||||    
T  7115676 tctataattcacaatcatacaaagacaccctcccaa 7115641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 234
Target Start/End: Original strand, 9315981 - 9316156
Alignment:
Q  53 agaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctat 152  Q
    |||||||| ||||| || |||||| ||||||||  |  |||  | ||||||||| |||||||||| || |||||||||||||||||||||||||| |||     
T  9315981 agaaccttacttccgtcactagaataacctaaaggcttcaaaaaattcaaagataaagtgaaacatgaattaaccaaagtaaaaagtttacaccaacta- 9316079  T
Q  153 ctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcccaa 234  Q
         |||| ||| |||||||||||||||||||||   | | |||||||||||| || || |||||||||||||||||||||    
T  9316080 -----gatccatagtctttcatcacccaaacatcagttttagtagtttgataattcaaaatcatacaaagacaccctcccaa 9316156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 12006224 - 12006117
Alignment:
Q  127 caaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacac 226  Q
    ||||||||||||||||||||| |||||| || | | |||||||||||||||||| |||||||  | | |||||||||||| ||||| || ||||||||||    
T  12006224 caaagtaaaaagtttacaccaactatctttacaaccatattctttcatcacccatacatcaatcttagtagtttgataattcacaatcaaacaaagacac 12006125  T
Q  227 cctcccaa 234  Q
    ||||||||    
T  12006124 cctcccaa 12006117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 12012667 - 12012545
Alignment:
Q  112 gaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccaca 211  Q
    |||||| ||||  ||||||||||||||||||||||| |||||| || | | |||||||||||||||| | |||||||  | | ||||||||| || ||||    
T  12012667 gaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcaca 12012568  T
Q  212 accatacaaagacaccctcccaa 234  Q
    | |||||||||||||||||||||    
T  12012567 atcatacaaagacaccctcccaa 12012545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 234
Target Start/End: Original strand, 9364662 - 9364771
Alignment:
Q  125 accaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagac 224  Q
    ||||||||||| | ||||||||| |||||| |  ||| ||||||||||||||||||||||||||  | | |||||||||||| ||||| ||||| |||||    
T  9364662 accaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcatactaagac 9364761  T
Q  225 accctcccaa 234  Q
    ||||||||||    
T  9364762 accctcccaa 9364771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 127 - 234
Target Start/End: Original strand, 9274557 - 9274664
Alignment:
Q  127 caaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacac 226  Q
    ||||||||||||||||||||| |||||| |||| | ||||||||||||||||||||| ||||  ||| || || |||||| || |  |||||||||||||    
T  9274557 caaagtaaaaagtttacaccaactatctgtagaaccatattctttcatcacccaaacttcaaattcagtatttcgataattcaaagtcatacaaagacac 9274656  T
Q  227 cctcccaa 234  Q
    ||| ||||    
T  9274657 ccttccaa 9274664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 234
Target Start/End: Original strand, 10347743 - 10347928
Alignment:
Q  49 caacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccag 148  Q
    |||||||||||| |||||||| |||||| ||| ||    || |||  ||||||||| | ||  |||||| || | | ||| ||||||||||||||||||     
T  10347743 caacagaaccttacttccatcactagaataacatatgggcctcaacaatttcaaaggtaaatcgaaacacgactcagccatagtaaaaagtttacaccaa 10347842  T
Q  149 ctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcccaa 234  Q
    ||||||||| ||| |||||||||||| |||||||||||||  | | ||  || |||||| |||   ||||||||||||||||||||    
T  10347843 ctatctctacatccatattctttcatgacccaaacatcaattttagtatctttataatcgacagtgatacaaagacaccctcccaa 10347928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 12018994 - 12018937
Alignment:
Q  127 caaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaaca 184  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  12018994 caaagtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaaca 12018937  T

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Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 17566190 - 17566110
Alignment:
Q  126 ccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataat 206  Q
    |||| ||||| | |||||||||  |||||||| ||| ||||||||| ||||||||||||||||||| | ||||||||||||    
T  17566190 ccaaggtaaacaatttacaccaattatctctaaatccatattctttaatcacccaaacatcaacattagtagtttgataat 17566110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 11987586 - 11987532
Alignment:
Q  134 aaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaa 188  Q
    |||||||||||||| ||||||||| ||| |||||||||||||||||||| |||||    
T  11987586 aaaagtttacaccaactatctctacatccatattctttcatcacccaaatatcaa 11987532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 7611974 - 7612036
Alignment:
Q  126 ccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaa 188  Q
    |||||||||| | ||||||||| |||||| |  ||| ||||||||||||||||||||||||||    
T  7611974 ccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaa 7612036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 8579592 - 8579531
Alignment:
Q  128 aaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaac 189  Q
    |||||||| | ||||||||| ||||||||| ||| ||||| ||||||||||||||| |||||    
T  8579592 aaagtaaacaatttacaccaactatctctaaatccatattttttcatcacccaaacctcaac 8579531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 45 - 229
Target Start/End: Complemental strand, 29443509 - 29443325
Alignment:
Q  45 cttgcaacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttaca 144  Q
    |||||||||||||| | |||| |||||| ||| ||||||||| || ||| | | |||||| | || ||||||| |||| | |||||||||||||||||||    
T  29443509 cttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttaca 29443410  T
Q  145 ccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccct 229  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||  | |  ||||||||||| ||||| ||||||||||||||||    
T  29443409 ccagctatctctacatccatattctttcatcacccaaacatcaattttagcagtttgataattcacaatcatacaaagacaccct 29443325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 49 - 234
Target Start/End: Complemental strand, 29453488 - 29453303
Alignment:
Q  49 caacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccag 148  Q
    |||||||||| | ||||||||||| ||| || |||||  || ||| | |||||||| | || ||||||| ||||   ||||||||||||||| |||||||    
T  29453488 caacagaaccatacttccatcgctcgaataagctaaaggccacaaagttttcaaaggtaaaatgaaacatgattccgccaaagtaaaaagttcacaccag 29453389  T
Q  149 ctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcccaa 234  Q
    ||||||||| ||| ||||||||||||||||||||||||||  | |  ||||||||||| ||||| |||||||||||||||| ||||    
T  29453388 ctatctctacatccatattctttcatcacccaaacatcaattttaacagtttgataattcacaatcatacaaagacacccttccaa 29453303  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 29467963 - 29467779
Alignment:
Q  50 aacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagc 149  Q
    ||||||||| | ||||||||||| ||| ||||||||  || ||| |||| |||   | |||||||||| ||| ||||||||||||||||||||| ||| |    
T  29467963 aacagaaccatacttccatcgctcgaataacctaaaggcctcaaagattccaactgtaaagtgaaacacgatctaaccaaagtaaaaagtttacgccaac 29467864  T
Q  150 tatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcccaa 234  Q
    |||||||| ||| |||||||||||||| |||||||||||  | |||||||||||||| ||||| ||   ||||||||||||||||    
T  29467863 tatctctacatccatattctttcatcaaccaaacatcaattttactagtttgataattcacaatcaactaaagacaccctcccaa 29467779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 45 - 229
Target Start/End: Original strand, 29423219 - 29423403
Alignment:
Q  45 cttgcaacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttaca 144  Q
    |||||||||||||| | | ||||||||| ||| || |||||| || ||| | |||||||| | | |||||||| ||||   |||||||||||||||||||    
T  29423219 cttgcaacagaaccatacctccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttaca 29423318  T
Q  145 ccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccct 229  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||  | |  ||||||||||| ||||  ||||||||| ||||||    
T  29423319 ccagctatctctacatccatattctttcatcagccaaacatcaattttaacagtttgataattcacagtcatacaaaggcaccct 29423403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 45243719 - 45243842
Alignment:
Q  111 tgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccac 210  Q
    ||||||| |||||||||||||||||||||||||||||  |||||||||| | ||||||||||||||||||||||||||  ||| |||||||||||| |||    
T  45243719 tgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagaaccatattctttcatcacccaaacatcaatttcattagtttgataattcac 45243818  T
Q  211 aaccatacaaagacaccctcccaa 234  Q
    || ||||||||||||| |||||||    
T  45243819 aatcatacaaagacactctcccaa 45243842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 226
Target Start/End: Original strand, 45230460 - 45230570
Alignment:
Q  119 gatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaaca---tcactagtttgataatccacaacca 215  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| ||   | | |||||||||||| ||||| ||    
T  45230460 gatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaacatcatcaattttattagtttgataattcacaatca 45230559  T
Q  216 tacaaagacac 226  Q
    |||||||||||    
T  45230560 tacaaagacac 45230570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 45237970 - 45238047
Alignment:
Q  111 tgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaa 188  Q
    ||||||| |||| ||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  45237970 tgaaacacgattcaactaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaacatcaa 45238047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 37462442 - 37462586
Alignment:
Q  44 ccttgcaacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttac 143  Q
    |||| ||||| |||||| |||||||| |||||| ||| ||||  || ||| |||||||||| |||||||||||| |||||| ||| |||| |||||||||    
T  37462442 ccttccaacaaaaccttacttccatcactagaataacataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttatccacagtacaaagtttac 37462541  T
Q  144 accagctatctctagatcgatattctttcatcacccaaacatcaa 188  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||    
T  37462542 accaactatctctagatccatattctttcatcacccaaacatcaa 37462586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 39427680 - 39427740
Alignment:
Q  128 aaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaa 188  Q
    |||||||| | ||||||||| |||| |||| ||| ||||||||||||||||||||||||||    
T  39427680 aaagtaaacaatttacaccaactatatctatatccatattctttcatcacccaaacatcaa 39427740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 26574882 - 26575001
Alignment:
Q  112 gaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccaca 211  Q
    |||||| |||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||  | | ||  || ||||||||||    
T  26574882 gaaacacgatttaaccacagtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaacatcaattttagtatctttataatccaca 26574981  T
Q  212 accatacaaagacaccctcc 231  Q
      ||||||||||||||||||    
T  26574982 gtcatacaaagacaccctcc 26575001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 561273 - 561320
Alignment:
Q  142 acaccagctatctctagatcgatattctttcatcacccaaacatcaac 189  Q
    |||||| ||||||||| ||| |||||||||||| ||||||||||||||    
T  561273 acaccaactatctctaaatccatattctttcattacccaaacatcaac 561320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 234
Target Start/End: Original strand, 4432 - 4614
Alignment:
Q  52 cagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagcta 151  Q
    ||||||||| |||||||| |||||| ||| ||||   | | | |||||||||  |||||||| ||| ||||| | || |||||||||||||||||| |||    
T  4432 cagaaccttacttccatcactagaataacataaaggactcgaagatttcaaatgtgaagtgacacacgatttcatcatagtaaaaagtttacaccaacta 4531  T
Q  152 tctctagatcgatattctttcatcacccaaacatcaacatcactagtttgataatccacaaccatacaaagacaccctcccaa 234  Q
    ||| |  ||| ||||| ||||||||||||||||||||  | | |||||| ||||| ||||  |||||||||||| ||||||||    
T  4532 tcttttaatccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaa 4614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 36224454 - 36224515
Alignment:
Q  127 caaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaa 188  Q
    ||||||||| | ||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  36224454 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 36224515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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