View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_146 (Length: 230)
Name: NF15962_low_146
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_146 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 36223185 - 36223399
Alignment:
| Q |
16 |
atgaagtaacataaaaattaatattatgaaaattggcttaggtgtgttctaagagaaggaagcttttaccacaggttgcatacggttcttgccaataggg |
115 |
Q |
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| T |
36223185 |
atgaagtaacataaaaattaatattatgaaaattggcttaggtgtgttctaagagaaggaagcttttaccacaggttgcatacggttcttgccaataggg |
36223284 |
T |
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| Q |
116 |
tattgatcatagtttggtttactcatagtatgagaagtgaaccaaagtataaatccagacaagagatccaagagtgagtccaaagttgatgcaatcacag |
215 |
Q |
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| T |
36223285 |
tattgatcatagtttggtttactcatagtatgagaagtgaaccaaagtataaatccagacaagagatccaagagtgagtccaaagttgatgcaatcacag |
36223384 |
T |
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| Q |
216 |
ccaaagatctacttt |
230 |
Q |
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| T |
36223385 |
ccaaagatctacttt |
36223399 |
T |
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