View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_147 (Length: 228)
Name: NF15962_low_147
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_147 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 38736136 - 38736319
Alignment:
| Q |
41 |
tcaaaatgcaaggattatgattctgctcgtaaggtgtttgatggtatgtctgaaagaaatgtgttttcttggactgtcatgattgttgcttcaaacgaac |
140 |
Q |
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| T |
38736136 |
tcaaaatgcaaggattatgattctgctcgtaaggtgtttgatggtatgtctgaaagaaatgtgttttcttggactgtcatgattgttgcttcaaacgaac |
38736235 |
T |
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| Q |
141 |
atggttactatcgttacgcgttggagcttttttgtatgatgttggagcagggtttgttgcttgatgggtttgctttctctgctg |
224 |
Q |
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| T |
38736236 |
atggttactatcgttacgcgttggagcttttttgtatgatgttggaacagggtttgttgcttgatgggtttgctttctctgctg |
38736319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38736155 - 38736110
Alignment:
| Q |
1 |
tcataatccttgcattttgagtaagcatgaactacatgattcaaaa |
46 |
Q |
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| T |
38736155 |
tcataatccttgcattttgagtaagcatgaactacatgattcaaaa |
38736110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 42761153 - 42761205
Alignment:
| Q |
64 |
tgctcgtaaggtgtttgatggtatgtctgaaagaaatgtgttttcttggactg |
116 |
Q |
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| T |
42761153 |
tgctcgtaaggtgtttgatgaattgtctgacagaaatgtggtttcttggactg |
42761205 |
T |
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