View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_149 (Length: 224)
Name: NF15962_low_149
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_149 |
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| [»] scaffold0653 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 21910888 - 21910695
Alignment:
| Q |
11 |
gtgagaagaatgagtttaattttgcggctacaaatgatgaaaaagaagtaacggcgagaaccatttggaggagggatggtcaggaaaggattttgtagaa |
110 |
Q |
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| T |
21910888 |
gtgagaagaatgagtttaattttgcggctgcaaatgatgaaaaagaagtaacggcgaaaaccatt-ggaggagggatggtcaggaaaggattttgtagaa |
21910790 |
T |
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| Q |
111 |
ggagaaaggaagaaaataagaaaacgtacaaaggtgtacaaactacaaaggaaacgtgttttgtgaaatatgcagagggaagcgtgtgaggagaa |
205 |
Q |
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| T |
21910789 |
ggagaaaggaagaaaataagaaaacgtacaaaggtgtacaaactacaaaggaaacgtgttttgtgaaatatgcagagggaagcgtgtgaggagaa |
21910695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 9326063 - 9326191
Alignment:
| Q |
11 |
gtgagaagaatgagtttaattttgcggctacaaatgatgaaaaagaagtaacggcgagaaccatttggaggagggatggtcaggaaaggattttgtagaa |
110 |
Q |
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| T |
9326063 |
gtgagaagaaggaatttaattttgtcgctgcaactaatgaaaaagaagtaacggcgagaactatttggaag-ggggtggttatgagaggattttgtaaaa |
9326161 |
T |
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| Q |
111 |
ggagaaaggaagaaaataagaaaacgtaca |
140 |
Q |
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| T |
9326162 |
ggagaaaggaagaaaagaagaaaacgtaca |
9326191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 8580 - 8708
Alignment:
| Q |
11 |
gtgagaagaatgagtttaattttgcggctacaaatgatgaaaaagaagtaacggcgagaaccatttggaggagggatggtcaggaaaggattttgtagaa |
110 |
Q |
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|||||||||| || |||||||||| ||| ||| | ||||||||||||||||||||||||| ||||||| | ||| |||| | || ||||||||||| || |
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| T |
8580 |
gtgagaagaaggaatttaattttgtcgctgcaactaatgaaaaagaagtaacggcgagaactatttggaag-ggggtggttatgagaggattttgtaaaa |
8678 |
T |
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| Q |
111 |
ggagaaaggaagaaaataagaaaacgtaca |
140 |
Q |
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|||||||||||||||| ||||||||||||| |
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| T |
8679 |
ggagaaaggaagaaaagaagaaaacgtaca |
8708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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