View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_15 (Length: 491)
Name: NF15962_low_15
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 47579253 - 47579729
Alignment:
| Q |
1 |
acaaatatactttcttgctttttaatttaattttgttactaaaatgcagctgaagcacttttattagggttccagcattacattctgactcttggcatga |
100 |
Q |
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| T |
47579253 |
acaaatatactttcttgctttttaatttaattttgttactaaaatgcagctgaagcacttttattagggttccagcattacattttgactcttggcatga |
47579352 |
T |
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| Q |
101 |
cagttttggttccaactatagttgttcctcaaatgggtggaagcaatgtaaacacnnnnnnnnnngt-gttacatttttgccttcttaaatgaatttcat |
199 |
Q |
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| T |
47579353 |
cagttttgattccaactatagttgttcctcaaatgggtggaagcaatgtaaacactttttttttttttgttacattttcgctttcttaaatgaatttcat |
47579452 |
T |
|
| Q |
200 |
gttttacaacagtatgaatttagtcaattagctgaaatctttgtttcaacgtagttggagaaggccaaggtgattcagagtacgttgtttgtttccggac |
299 |
Q |
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| T |
47579453 |
gttttacaacagtatgaatttagtcaattagctgaaatctttgtttcaacgtagttggagaaggccaaggtgattcagagtacgttgtttgtttctggac |
47579552 |
T |
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| Q |
300 |
taagcacgtttcttcaatctttattcggaacccgattgccaagtgtagttgttggttcatacacttacatgataccaattatgtcagctgttcaagctag |
399 |
Q |
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| T |
47579553 |
tgagcacgtttcttcaatctttattcggaacccgattgccaagtgtagttgttggttcatacacttacatgataccaattatgtcagctgttcaagctag |
47579652 |
T |
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| Q |
400 |
cagatacagttcatatacagatccttatgaggttcatgtgtacnnnnnnnnncatgctccatttttgttgttggtgtt |
477 |
Q |
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| T |
47579653 |
cagatacagttcatatacagatccttatgaggttcatgtgtac-ttttttttcatgctccatttttgttgttggtgtt |
47579729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 287 - 432
Target Start/End: Original strand, 8683237 - 8683382
Alignment:
| Q |
287 |
tttgtttccggactaagcacgtttcttcaatctttattcggaacccgattgccaagtgtagttgttggttcatacacttacatgataccaattatgtcag |
386 |
Q |
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| T |
8683237 |
tttgtgtctggactaagcacattttttcaatctttgttcggaactcgattgccaattgtaattgttggttcatacagttacataatacctataatttcta |
8683336 |
T |
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| Q |
387 |
ctgttcaagctagcagatacagttcatatacagatccttatgaggt |
432 |
Q |
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| T |
8683337 |
ttgttcaggctagcagatataatgcatatacagatccttatgaggt |
8683382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 8683036 - 8683104
Alignment:
| Q |
73 |
cagcattacattctgactcttggcatgacagttttggttccaactatagttgttcctcaaatgggtgga |
141 |
Q |
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| T |
8683036 |
cagcattaccttctaactcttggcattacagttctgattccaactataattgttcctcaaatgggtgga |
8683104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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