View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_152 (Length: 223)
Name: NF15962_low_152
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_152 |
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Alignment Details
Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 10574090 - 10574019
Alignment:
| Q |
101 |
gtaatcaatatataaccaaagggtaaattttgttttgacataattcaaactatgattaacgtatatataatg |
172 |
Q |
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| T |
10574090 |
gtaatcaatatataaccaaagggtaaattttgttttgacataattcaaactatgattaacgtatatataatg |
10574019 |
T |
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Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 10574190 - 10574130
Alignment:
| Q |
1 |
cattttcataatagtccacctttattgactcggaactttcatcggtattaccatacatact |
61 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10574190 |
cattttcataatagcccacctttatttactcggaactttcatcggtattaccatacatact |
10574130 |
T |
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