View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_16 (Length: 491)
Name: NF15962_low_16
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 38730900 - 38731376
Alignment:
| Q |
1 |
acgatgtttgcgattagatttctgtttgaaaaagtctcaaaagacattttttaaacaaaaagaagtaacaagcaaacccctcccattagaaaaaccagtc |
100 |
Q |
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|||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38730900 |
acgatgatcgcgattagatttgtgtttgaaaaagtctcaaaagacattttttaaacaaaaagaagtaacaagcaaacccctcccattagaaaaaccagtc |
38730999 |
T |
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| Q |
101 |
cctaattgcacctgccataaagaaatgtctcccttgaaccctacacatgacccttccatgtctcccctttcatgttttttataagactcttttatgcctc |
200 |
Q |
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| T |
38731000 |
cctaattgcacctgccataaagaaatgtctcccttgaaccctacacatgacccttccatgtctcccctttcatgttttttataagactcttttatgcctc |
38731099 |
T |
|
| Q |
201 |
ttattcccactgtcccacttccatctcactcactcctcaaattttagtatttagaacctttcaccatttcctagtgtgtccgtgtgcatagcaacaattt |
300 |
Q |
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| T |
38731100 |
ttattcccactgtcccacttccatctcactcactcctcaaattttagtatttagaacctttcaccatttcctagtgtgtccgtgtgcctagcaacaattt |
38731199 |
T |
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| Q |
301 |
ttattcactttctttcacttctcatacgcacacaacatcaaaaacaaaacacaacctttctaatatcaatatggcttcttcaaatggaactagctctgga |
400 |
Q |
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| T |
38731200 |
ttattcactttctttcacttctcacacgcacacaacatcaaaaacaaaacacaacctttctaatatcaatatggcttcttcaaatggaactagctctgga |
38731299 |
T |
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| Q |
401 |
actggttctccttgtggagcatgcaagttccttagaagaaaatgtgcacctgattgcatttttgcaccttacttttg |
477 |
Q |
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| T |
38731300 |
accggttctccttgtggagcatgcaagttccttagaagaaaatgtgcacctgattgcatttttgcaccttacttttg |
38731376 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 437 - 475
Target Start/End: Complemental strand, 5747522 - 5747484
Alignment:
| Q |
437 |
agaaaatgtgcacctgattgcatttttgcaccttacttt |
475 |
Q |
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| T |
5747522 |
agaaaatgtgcacctgattgcattctagcaccttacttt |
5747484 |
T |
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