View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_low_162 (Length: 201)

Name: NF15962_low_162
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_low_162
NF15962_low_162
[»] chr7 (4 HSPs)
chr7 (8-194)||(48235985-48236171)
chr7 (76-183)||(9708686-9708793)
chr7 (77-182)||(14124363-14124468)
chr7 (77-182)||(14427759-14427864)
[»] scaffold0227 (1 HSPs)
scaffold0227 (76-194)||(25156-25274)
[»] chr1 (3 HSPs)
chr1 (76-185)||(22463559-22463668)
chr1 (76-194)||(29216865-29216983)
chr1 (95-156)||(19718719-19718780)
[»] chr8 (5 HSPs)
chr8 (8-77)||(2305445-2305514)
chr8 (8-77)||(2310639-2310708)
chr8 (80-156)||(15334886-15334962)
chr8 (80-156)||(15423949-15424025)
chr8 (80-156)||(15515255-15515331)
[»] chr6 (3 HSPs)
chr6 (76-194)||(22803308-22803426)
chr6 (76-185)||(21626263-21626372)
chr6 (95-157)||(13603367-13603429)
[»] chr4 (1 HSPs)
chr4 (76-183)||(13574953-13575060)
[»] chr5 (1 HSPs)
chr5 (76-150)||(26743679-26743753)
[»] chr3 (2 HSPs)
chr3 (76-162)||(18140406-18140492)
chr3 (95-162)||(16657529-16657596)
[»] scaffold0007 (1 HSPs)
scaffold0007 (76-185)||(144257-144366)
[»] chr2 (1 HSPs)
chr2 (98-154)||(28710673-28710729)
[»] scaffold0315 (1 HSPs)
scaffold0315 (126-166)||(19141-19181)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 8e-97; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 48235985 - 48236171
Alignment:
Q  8 aaggatgagtatagaggaaacaaacaaggaacacgaggcaattggagaggttccaactttagagcaatgaatgcagaacttgaagcagaaaataagaagc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235985 aaggatgagtatagaggaaacaaacaaggaacacgaggcaattggagaggttccaactttagagcaatgaatgcagaacttgaagcagaaaataagaagc 48236084  T
Q  108 taaggaaggaagttctagaacagaagctactgctgctggaatacaagtcaaccactgaaacgcagttagaagaagcaaaggctagag 194  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48236085 taaggaaggaagttctagaacataagctactgctgctggaatacaagtcaaccactgaagcgcagttagaagaagcaaaggctagag 48236171  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 9708686 - 9708793
Alignment:
Q  76 gaatgcagaacttgaagcagaaaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaatacaagtcaaccactgaaacgcagtta 175  Q
    ||||| ||| ||||||  |||||| ||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||| |||| ||| |||| |||    
T  9708686 gaatgtagagcttgaattagaaaacaagaagctaaggaaggaagttcttgaacagaagctactactgttggaatacaagtcatccacagaagcgcaatta 9708785  T
Q  176 gaagaagc 183  Q
    ||||||||    
T  9708786 gaagaagc 9708793  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 14124468 - 14124363
Alignment:
Q  77 aatgcagaacttgaagcagaaaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaatacaagtcaaccactgaaacgcagttag 176  Q
    |||||||||||||| ||  | ||||||||| |||| ||||||||||||||| |||| |||||| |||||||||||||| | || |||||| | |||||||    
T  14124468 aatgcagaacttgaggctaagaataagaagttaagaaaggaagttctagaatagaatctactgttgctggaatacaagactactactgaagcacagttag 14124369  T
Q  177 aagaag 182  Q
    | ||||    
T  14124368 aggaag 14124363  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 14427864 - 14427759
Alignment:
Q  77 aatgcagaacttgaagcagaaaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaatacaagtcaaccactgaaacgcagttag 176  Q
    |||||||||||||| ||  | ||||||||| |||| ||||||||||||||| |||| |||||| |||||||||||||| | || |||||| | |||||||    
T  14427864 aatgcagaacttgaggctaagaataagaagttaagaaaggaagttctagaatagaatctactgttgctggaatacaagactactactgaagcacagttag 14427765  T
Q  177 aagaag 182  Q
    | ||||    
T  14427764 aggaag 14427759  T

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Target: scaffold0227 (Bit Score: 75; Significance: 9e-35; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 76 - 194
Target Start/End: Complemental strand, 25274 - 25156
Alignment:
Q  76 gaatgcagaacttgaagcagaaaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaatacaagtcaaccactgaaacgcagtta 175  Q
    ||||||||||||||||   ||||| |||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| |||| |||| |||||||    
T  25274 gaatgcagaacttgaaaaggaaaacaagaagcttaggaaggaagttcttgaacagaagctactgctgcaggaatacaagtcatccacagaaaagcagtta 25175  T
Q  176 gaagaagcaaaggctagag 194  Q
    || ||||||||||||||||    
T  25174 gaggaagcaaaggctagag 25156  T

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Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 22463559 - 22463668
Alignment:
Q  76 gaatgcagaacttgaagcagaaaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaatacaagtcaaccactgaaacgcagtta 175  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||  || ||||||||    
T  22463559 gaatgcagagcttgaatcagaaaacaagaagctaaggaaggaagttcttgaacagaagctattgctgctggaatacaagtcatccacaaaagcgcagtta 22463658  T
Q  176 gaagaagcaa 185  Q
    ||||||||||    
T  22463659 gaagaagcaa 22463668  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 76 - 194
Target Start/End: Complemental strand, 29216983 - 29216865
Alignment:
Q  76 gaatgcagaacttgaagcagaaaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaatacaagtcaaccactgaaacgcagtta 175  Q
    ||||| ||||||||||| |||||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| ||||  || ||||||||    
T  29216983 gaatgtagaacttgaagtagaaaacaagaagcttagaaaggaagttcttgaacagaagctactgctgctggaatacaagtcatccacaaaagcgcagtta 29216884  T
Q  176 gaagaagcaaaggctagag 194  Q
    || ||||||| ||||||||    
T  29216883 gatgaagcaagggctagag 29216865  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 19718780 - 19718719
Alignment:
Q  95 gaaaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaatacaagtc 156  Q
    ||||||| |||||||||||| ||| |||| || ||||||||||| ||| | |||||||||||    
T  19718780 gaaaataggaagctaaggaaagaacttcttgagcagaagctacttctgatagaatacaagtc 19718719  T

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Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 2305445 - 2305514
Alignment:
Q  8 aaggatgagtatagaggaaacaaacaaggaacacgaggcaattggagaggttccaactttagagcaatga 77  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2305445 aaggctgagtatagaggaaacaaacaaggaacacgaggcaattggagaggttccaactttagagcaatga 2305514  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 2310639 - 2310708
Alignment:
Q  8 aaggatgagtatagaggaaacaaacaaggaacacgaggcaattggagaggttccaactttagagcaatga 77  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2310639 aaggctgagtatagaggaaacaaacaaggaacacgaggcaattggagaggttccaactttagagcaatga 2310708  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 15334886 - 15334962
Alignment:
Q  80 gcagaacttgaagcagaaaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaatacaagtc 156  Q
    ||||||||||| || ||||  |||||||| || |||||||| |||||||| |||||| ||||  || ||||||||||    
T  15334886 gcagaacttgaggctgaaatcaagaagcttagaaaggaagtgctagaacaaaagctattgctattgaaatacaagtc 15334962  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 15423949 - 15424025
Alignment:
Q  80 gcagaacttgaagcagaaaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaatacaagtc 156  Q
    ||||||||||| || ||||  |||||||| || |||||||| |||||||| |||||| ||||  || ||||||||||    
T  15423949 gcagaacttgaggctgaaatcaagaagcttagaaaggaagtgctagaacaaaagctattgctattgaaatacaagtc 15424025  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 15515255 - 15515331
Alignment:
Q  80 gcagaacttgaagcagaaaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaatacaagtc 156  Q
    ||||||||||| || ||||  |||||||| || |||||||| |||||||| |||||| ||||  || ||||||||||    
T  15515255 gcagaacttgaggctgaaatcaagaagcttagaaaggaagtgctagaacaaaagctattgctattgaaatacaagtc 15515331  T

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Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 76 - 194
Target Start/End: Complemental strand, 22803426 - 22803308
Alignment:
Q  76 gaatgcagaacttgaagcagaaaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaatacaagtcaaccactgaaacgcagtta 175  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||| | ||||| |||||||||||| |||  ||| | ||||||    
T  22803426 gaatgcagagcttgaatcagaaaacaagaagctaaggaaggaagttcttgaacagaagctattcctgctagaatacaagtcatccaaagaagcacagtta 22803327  T
Q  176 gaagaagcaaaggctagag 194  Q
    |||||||||| || |||||    
T  22803326 gaagaagcaatggttagag 22803308  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 21626372 - 21626263
Alignment:
Q  76 gaatgcagaacttgaagcagaaaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaatacaagtcaaccactgaaacgcagtta 175  Q
    ||||||||||||||||   ||||| ||||||||||| ||||||||||| |||||||| |||||  |||| || || |||||| ||||  || | ||||||    
T  21626372 gaatgcagaacttgaaaaggaaaacaagaagctaagaaaggaagttcttgaacagaacctactattgcttgagtataagtcatccacataagcacagtta 21626273  T
Q  176 gaagaagcaa 185  Q
    ||||||||||    
T  21626272 gaagaagcaa 21626263  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 13603429 - 13603367
Alignment:
Q  95 gaaaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaatacaagtca 157  Q
    ||||| ||| |||| || || |||||||| |||||||||||||||||||| ||||||||||||    
T  13603429 gaaaacaagcagctcagaaaagaagttcttgaacagaagctactgctgcttgaatacaagtca 13603367  T

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Target: chr4 (Bit Score: 60; Significance: 8e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 13574953 - 13575060
Alignment:
Q  76 gaatgcagaacttgaagcagaaaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaatacaagtcaaccactgaaacgcagtta 175  Q
    ||||| ||| ||||||  |||||| ||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||| |||| ||| |||| |||    
T  13574953 gaatgtagagcttgaattagaaaacaagaagctaaggaaggaagttcttgaacagaagctactactgttggaatacaagtcatccacagaagcgcaatta 13575052  T
Q  176 gaagaagc 183  Q
    ||||||||    
T  13575053 gaagaagc 13575060  T

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Target: chr5 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 26743753 - 26743679
Alignment:
Q  76 gaatgcagaacttgaagcagaaaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaata 150  Q
    ||||||||||||| | |  || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26743753 gaatgcagaacttaaggttgagaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaata 26743679  T

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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 76 - 162
Target Start/End: Original strand, 18140406 - 18140492
Alignment:
Q  76 gaatgcagaacttgaagcagaaaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaatacaagtcaaccac 162  Q
    |||| |||||||||||   ||||| ||||||||||| || |||||||| |||||||||||||| |||||||||||||||||| ||||    
T  18140406 gaatacagaacttgaaaaggaaaacaagaagctaagaaaagaagttcttgaacagaagctactcctgctggaatacaagtcatccac 18140492  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 16657529 - 16657596
Alignment:
Q  95 gaaaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaatacaagtcaaccac 162  Q
    ||||| ||| |||| || || |||||||| |||||||||||||| ||||| |||||||||||| ||||    
T  16657529 gaaaacaagtagctcagaaaagaagttcttgaacagaagctactactgcttgaatacaagtcatccac 16657596  T

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Target: scaffold0007 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 144366 - 144257
Alignment:
Q  76 gaatgcagaacttgaagcagaaaataagaagctaaggaaggaagttctagaacagaagctactgctgctggaatacaagtcaaccactgaaacgcagtta 175  Q
    ||||||||||||||||   ||||| |||||||| || ||||||||||| ||||||||||||||||| || || || |||||  |||||||| |  |||||    
T  144366 gaatgcagaacttgaaaaggaaaacaagaagcttagaaaggaagttcttgaacagaagctactgcttctagagtataagtcttccactgaagcatagtta 144267  T
Q  176 gaagaagcaa 185  Q
    ||||||||||    
T  144266 gaagaagcaa 144257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 28710673 - 28710729
Alignment:
Q  98 aataagaagctaaggaaggaagttctagaacagaagctactgctgctggaatacaag 154  Q
    ||||| ||||| || |||||||| ||||||||||||||||| |||||| ||||||||    
T  28710673 aataaaaagctcagaaaggaagtgctagaacagaagctactcctgctgaaatacaag 28710729  T

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Target: scaffold0315 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 19181 - 19141
Alignment:
Q  126 aacagaagctactgctgctggaatacaagtcaaccactgaa 166  Q
    |||||||||||||  ||||||||||||||||| ||||||||    
T  19181 aacagaagctactcttgctggaatacaagtcatccactgaa 19141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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