View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_17 (Length: 487)
Name: NF15962_low_17
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 6e-69; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 292 - 472
Target Start/End: Complemental strand, 6408296 - 6408116
Alignment:
| Q |
292 |
acaatataattcaagtagcaaataagttctagtctccaaagctcaacataacatatctaacattcaagcaggacataaagcaaaataggaaacaagttct |
391 |
Q |
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| T |
6408296 |
acaatataattcttgtagcaaataagttctagtctccaaagctcaacataacatatctaacattcaaacagaatataaagcaaaataggaaataagttct |
6408197 |
T |
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| Q |
392 |
accctccaaggcttaaaataaaataaacgaaagaaaggaaaaacaggagcattctccaatgtctacgggtacaataatcat |
472 |
Q |
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| T |
6408196 |
agcctccaagggttaaaataaaataaacgaaagaaaggaaaaacaggagcattcgccaatgtccatgggcacaataatcat |
6408116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 6411477 - 6411410
Alignment:
| Q |
322 |
agtctccaaagctcaacataacatatctaacattcaagcaggacataaagcaaaataggaaacaagtt |
389 |
Q |
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| T |
6411477 |
agtctccaaagctcaacataagacatctaacattcaaacaggacataaagcaaaataggaaataagtt |
6411410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 133 - 271
Target Start/End: Complemental strand, 6408529 - 6408390
Alignment:
| Q |
133 |
ctgtcccaatttaagcctgtagc-tattatattatcgatattaagcctatgtagcatcgcgaccatccctaaaactctataacggtgtagcg-gtacacc |
230 |
Q |
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| T |
6408529 |
ctgttccaatttaagcccatagcctattatat-atcgatattaagcctatgtggcatagcggccatccccgaaatgctataacggtgtagtgagtatacc |
6408431 |
T |
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| Q |
231 |
cactacgtcaaagtctagtgaaacaatgcaagcactacaca |
271 |
Q |
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| T |
6408430 |
cgccacatcaaagtctagcgaaacaattcaagcactacaca |
6408390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 414
Target Start/End: Original strand, 22221680 - 22221786
Alignment:
| Q |
308 |
agcaaataagttctagtctccaaagctcaacataacatatctaacattcaagcaggacataaagcaaaataggaaacaagttctaccctccaaggcttaa |
407 |
Q |
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||||||||||||| ||||||||| |||||| |||||| |||||| |||||| | | | || ||||||||||||||||| || | ||||||||||| || |
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| T |
22221680 |
agcaaataagttccagtctccaaggctcaaaataacacatctaatattcaaactgaatatgaagcaaaataggaaacagatttaagcctccaaggctcaa |
22221779 |
T |
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| Q |
408 |
aataaaa |
414 |
Q |
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||||||| |
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| T |
22221780 |
aataaaa |
22221786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 414
Target Start/End: Original strand, 9824248 - 9824374
Alignment:
| Q |
288 |
aaacacaatataattcaagtagcaaataagttctagtctccaaagctcaacataacatatctaacattcaagcaggacataaagcaaaataggaaacaag |
387 |
Q |
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||||| |||||||||||||||||||||||||| ||| ||||| |||||| |||||||||||| |||||| || |||||| ||||| |||||| ||| |
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| T |
9824248 |
aaacataatataattcaagtagcaaataagttgtagcctccatggctcaaagtaacatatctaatattcaaacatatcataaatcaaaaaaggaaataag |
9824347 |
T |
|
| Q |
388 |
ttctaccctccaaggcttaaaataaaa |
414 |
Q |
| |
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|| || ||||||||||| ||||||||| |
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| T |
9824348 |
ttatagcctccaaggctcaaaataaaa |
9824374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 288 - 414
Target Start/End: Original strand, 9818530 - 9818659
Alignment:
| Q |
288 |
aaacacaatataattcaagtagcaaataagttctagtctccaaagctcaacataaca---tatctaacattcaagcaggacataaagcaaaataggaaac |
384 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||| |||| | |||||| |||||| |||| || |||| | || |||||||||||||||||||| |
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| T |
9818530 |
aaacataatataattcaagtagcaaataagttgtagcctccgaggctcaaaataacaacatatcgaatattccaacataacataaagcaaaataggaaat |
9818629 |
T |
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| Q |
385 |
aagttctaccctccaaggcttaaaataaaa |
414 |
Q |
| |
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||||| || |||||||| || ||||||||| |
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| T |
9818630 |
aagttatagcctccaagactcaaaataaaa |
9818659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 401
Target Start/End: Original strand, 4966586 - 4966672
Alignment:
| Q |
315 |
aagttctagtctccaaagctcaacataacatatctaacattcaagcaggacataaagcaaaataggaaacaagttctaccctccaag |
401 |
Q |
| |
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||||||||| |||||| |||||| || ||| |||||| |||||| || |||||||||||||||||||||||||||| |||||||| |
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| T |
4966586 |
aagttctaggctccaaggctcaaaatgacacatctaatattcaaacatagcataaagcaaaataggaaacaagttctagcctccaag |
4966672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 428
Target Start/End: Original strand, 4966710 - 4966774
Alignment:
| Q |
364 |
acataaagcaaaataggaaacaagttctaccctccaaggcttaaaataaaataaacgaaagaaag |
428 |
Q |
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| T |
4966710 |
acataaagcagaattggaaataagttctagcctccaaggttcaaagtaaaataaacgaatgaaag |
4966774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 43545704 - 43545662
Alignment:
| Q |
279 |
taatgtttcaaacacaatataattcaagtagcaaataagttct |
321 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
43545704 |
taatatttcaaacataatataattcaagtagcaaataagttct |
43545662 |
T |
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