View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_low_19 (Length: 471)

Name: NF15962_low_19
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_low_19
NF15962_low_19
[»] chr3 (6 HSPs)
chr3 (1-370)||(23560507-23560876)
chr3 (259-374)||(12061009-12061124)
chr3 (262-372)||(48866556-48866667)
chr3 (273-330)||(48866644-48866702)
chr3 (16-83)||(12061363-12061430)
chr3 (176-210)||(12061180-12061214)
[»] chr6 (6 HSPs)
chr6 (1-210)||(14326657-14326866)
chr6 (1-210)||(14419667-14419876)
chr6 (258-374)||(14326515-14326631)
chr6 (258-374)||(14419525-14419641)
chr6 (258-372)||(21283298-21283416)
chr6 (260-345)||(16269374-16269459)
[»] chr8 (10 HSPs)
chr8 (1-161)||(13366351-13366510)
chr8 (259-374)||(8096183-8096298)
chr8 (258-374)||(39567666-39567782)
chr8 (258-374)||(45377721-45377837)
chr8 (234-341)||(13366123-13366230)
chr8 (258-330)||(39270195-39270267)
chr8 (162-210)||(13366254-13366302)
chr8 (42-89)||(9244975-9245022)
chr8 (176-210)||(8096099-8096133)
chr8 (53-89)||(8096021-8096057)
[»] chr2 (3 HSPs)
chr2 (1-163)||(14509849-14510010)
chr2 (234-372)||(14510128-14510266)
chr2 (162-210)||(14510056-14510104)
[»] chr4 (6 HSPs)
chr4 (234-369)||(40145365-40145500)
chr4 (258-374)||(35055944-35056060)
chr4 (258-374)||(16038859-16038975)
chr4 (261-364)||(756826-756929)
chr4 (261-364)||(702273-702376)
chr4 (261-364)||(770572-770675)
[»] chr1 (5 HSPs)
chr1 (258-372)||(40812236-40812350)
chr1 (262-374)||(2972084-2972196)
chr1 (258-372)||(16962754-16962868)
chr1 (261-372)||(51598589-51598700)
chr1 (176-210)||(40812155-40812189)
[»] scaffold0122 (3 HSPs)
scaffold0122 (234-374)||(16834-16974)
scaffold0122 (48-163)||(16601-16715)
scaffold0122 (162-210)||(16762-16810)
[»] chr7 (4 HSPs)
chr7 (258-372)||(21709922-21710036)
chr7 (261-364)||(26025518-26025621)
chr7 (234-326)||(33458702-33458794)
chr7 (42-89)||(29187574-29187621)
[»] scaffold0031 (2 HSPs)
scaffold0031 (261-364)||(123761-123864)
scaffold0031 (306-364)||(134632-134690)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 23560507 - 23560876
Alignment:
Q  1 aaaaacgcataaggaaacaatacagaaggaacatcgcccaaggaattggaatcaaaattggattggaattaattttccaagaacaaaaatgcataaagga 100  Q
    |||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23560507 aaaaacgcatgaggaaacaatacagaaggaacatcggacaaggaattggaatcaaaattggattggaattaattttccaagaacaaaaatgcattaagga 23560606  T
Q  101 acaacagtgcagcaaaaggaacaaaaacgtagcacaacatcaacacaacaaatctgctccccaaatctgattccgatttttcccttttaatccggtccaa 200  Q
    |||||| ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||  |||||||||||||||||||||| ||    
T  23560607 acaacaatgcagcaaaaggaacaaaaacgtagcaaaacaacaacataacaaatctgctccccaaatctgattctcatttttcccttttaatccggtctaa 23560706  T
Q  201 atctgctcccnnnnnnnnnnnnnnnnnnnnnnnaatgggttaatgttcatnnnnnnntgggtttagattgggatttgaaagtgtttagattagatccaaa 300  Q
    ||| ||||||                       |||||||||||||||||       ||||||| |||||| ||||||||||||||||||||||||||||    
T  23560707 atcagctccccaaaaacaacacaacaacaacaaaatgggttaatgttcataaaaaaatgggtttggattggaatttgaaagtgtttagattagatccaaa 23560806  T
Q  301 aatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattcgaaaatgagtttt 370  Q
    ||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||    
T  23560807 aatgggtttagattggaatatgaaaggattaatactaatgatgaatgattggaattcgaaaatgagtttt 23560876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 259 - 374
Target Start/End: Complemental strand, 12061124 - 12061009
Alignment:
Q  259 gggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattcg 358  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||||||| ||||||    
T  12061124 gggtttagattgggatttggaagagtttagattagatccaaaaatggatttagattagaatatgaaaggattgatgttgatgatgaaggattgtaattcg 12061025  T
Q  359 aaaatgagttttttat 374  Q
    |||| |||||||||||    
T  12061024 aaaaagagttttttat 12061009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 262 - 372
Target Start/End: Complemental strand, 48866667 - 48866556
Alignment:
Q  262 tttagattgggatttgaaagtgtttagattagatccaaaaatgggttt-agattggaatatgaaaggattaatgctgatgatgaaggattggaattcgaa 360  Q
    |||||||||  |||||||||  |||||||||||||||||||||||||| |||||| ||| |||||||||| ||| |||||||||||||||||||||||||    
T  48866667 tttagattgaaatttgaaaggatttagattagatccaaaaatgggttttagattgaaatttgaaaggattgatgttgatgatgaaggattggaattcgaa 48866568  T
Q  361 aatgagtttttt 372  Q
    ||||||||||||    
T  48866567 aatgagtttttt 48866556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 48866702 - 48866644
Alignment:
Q  273 atttgaaagtgtttagattagatccaaaaatggg-tttagattggaatatgaaaggatt 330  Q
    ||||| ||| |||||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  48866702 atttggaagggtttagattagatccaaaaatgggttttagattgaaatttgaaaggatt 48866644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 12061430 - 12061363
Alignment:
Q  16 aacaatacagaaggaacatcgcccaaggaattggaatcaaaattggattggaattaattttccaagaa 83  Q
    |||||||||||||||||| | |   | |||||| ||||||| ||| ||||||||||||||||||||||    
T  12061430 aacaatacagaaggaacaacacaacaagaattgtaatcaaagttgtattggaattaattttccaagaa 12061363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 12061214 - 12061180
Alignment:
Q  176 atttttcccttttaatccggtccaaatctgctccc 210  Q
    ||||||||||||||| |||||||||||||||||||    
T  12061214 atttttcccttttaacccggtccaaatctgctccc 12061180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 14326866 - 14326657
Alignment:
Q  1 aaaaacgcataaggaaacaatacagaaggaacatcgcccaaggaattggaatcaaaattggattggaattaattttccaagaacaaaaatgcataaagga 100  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14326866 aaaaacgcaaaaggaaacaatacagaaggaacatcgcacaaggaattggaatcaaaattggattggaattaattttccaagaacaaaaatgcataaagga 14326767  T
Q  101 acaacagtgcagcaaaaggaacaaaaacgtagcacaacatcaacacaacaaatctgctccccaaatctgattccgatttttcccttttaatccggtccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14326766 acaacagtgcagcaaaaggaacaaaaacgtagcacaacatcaacacaacaaatctgctccccaaatctgattccgatttttcccttttaatccggtccaa 14326667  T
Q  201 atctgctccc 210  Q
    ||| ||||||    
T  14326666 atccgctccc 14326657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 14419876 - 14419667
Alignment:
Q  1 aaaaacgcataaggaaacaatacagaaggaacatcgcccaaggaattggaatcaaaattggattggaattaattttccaagaacaaaaatgcataaagga 100  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14419876 aaaaacgcaaaaggaaacaatacagaaggaacatcgcacaaggaattggaatcaaaattggattggaattaattttccaagaacaaaaatgcataaagga 14419777  T
Q  101 acaacagtgcagcaaaaggaacaaaaacgtagcacaacatcaacacaacaaatctgctccccaaatctgattccgatttttcccttttaatccggtccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14419776 acaacagtgcagcaaaaggaacaaaaacgtagcacaacatcaacacaacaaatctgctccccaaatctgattccgatttttcccttttaatccggtccaa 14419677  T
Q  201 atctgctccc 210  Q
    ||| ||||||    
T  14419676 atccgctccc 14419667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 258 - 374
Target Start/End: Complemental strand, 14326631 - 14326515
Alignment:
Q  258 tgggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattc 357  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14326631 tgggtttagattgggatttggaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattc 14326532  T
Q  358 gaaaatgagttttttat 374  Q
    |||||||||||||||||    
T  14326531 gaaaatgagttttttat 14326515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 258 - 374
Target Start/End: Complemental strand, 14419641 - 14419525
Alignment:
Q  258 tgggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattc 357  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14419641 tgggtttagattgggatttggaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattc 14419542  T
Q  358 gaaaatgagttttttat 374  Q
    |||||||||||||||||    
T  14419541 gaaaatgagttttttat 14419525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 372
Target Start/End: Complemental strand, 21283416 - 21283298
Alignment:
Q  258 tgggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggat-taatgc---tgatgatgaaggattgga 353  Q
    |||||||||||||||||||| |||  |||||||||||||||||| ||||||||||||||||| ||||||||| || |||   |||| ||||| |||||      
T  21283416 tgggtttagattgggatttggaagaatttagattagatccaaaattgggtttagattggaatttgaaaggatatattgctattgataatgaatgattgac 21283317  T
Q  354 attcgaaaatgagtttttt 372  Q
    |||||||||||||||||||    
T  21283316 attcgaaaatgagtttttt 21283298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 345
Target Start/End: Original strand, 16269374 - 16269459
Alignment:
Q  260 ggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaa 345  Q
    |||||||||||| ||||| ||| |||||||||||||| ||||||  ||||| |||||||| |||||||||| |||  |||||||||    
T  16269374 ggtttagattggaatttgtaagggtttagattagatctaaaaatttgtttatattggaatttgaaaggattgatgtagatgatgaa 16269459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 13366510 - 13366351
Alignment:
Q  1 aaaaacgcataaggaaacaatacagaaggaacatcgcccaaggaattggaatcaaaattggattggaattaattttccaagaacaaaaatgcataaagga 100  Q
    ||||| ||||||||||||||||||||||||||| |||   ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  13366510 aaaaatgcataaggaaacaatacagaaggaacaacgcagtaggaattggaatcaaaattggtttgggattaattttccaagaacaaaaatgcatagagga 13366411  T
Q  101 acaacagtgcagcaaaaggaacaaaaacgtagcacaacatcaacacaacaaatctgctccc 161  Q
    | | |||||||||| || ||||||||||| |||| |||| || ||||||||||||||||||    
T  13366410 aaaccagtgcagcataa-gaacaaaaacgcagcataacaacatcacaacaaatctgctccc 13366351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 259 - 374
Target Start/End: Original strand, 8096183 - 8096298
Alignment:
Q  259 gggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattcg 358  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| ||||||    
T  8096183 gggtttagattgggatttggaagagtttagattagatccaaaaatggatttagattggaatatgaaaggattgatgttgatgatgaaggattgtaattcg 8096282  T
Q  359 aaaatgagttttttat 374  Q
    |||| |||||||||||    
T  8096283 aaaaagagttttttat 8096298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 258 - 374
Target Start/End: Original strand, 39567666 - 39567782
Alignment:
Q  258 tgggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattc 357  Q
    |||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||| |||||||||| ||  |||||||||| |||||| ||||    
T  39567666 tgggtttagattgggatttggaagaatttagattagatccaaaaatgggtttagattggaatttgaaaggattgatattgatgatgaatgattggcattc 39567765  T
Q  358 gaaaatgagttttttat 374  Q
     ||||||||||||||||    
T  39567766 aaaaatgagttttttat 39567782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 258 - 374
Target Start/End: Original strand, 45377721 - 45377837
Alignment:
Q  258 tgggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattc 357  Q
    ||||||| ||||||||||||||||  |||| |||||||||||||||| |||||||||||||| |||||||||| ||  |||||||||| |||||| ||||    
T  45377721 tgggtttggattgggatttgaaagaatttaaattagatccaaaaatgagtttagattggaatttgaaaggattgatattgatgatgaatgattggcattc 45377820  T
Q  358 gaaaatgagttttttat 374  Q
    |||||||||||||||||    
T  45377821 gaaaatgagttttttat 45377837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 234 - 341
Target Start/End: Complemental strand, 13366230 - 13366123
Alignment:
Q  234 aatgggttaatgttcatnnnnnnntgggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaat 333  Q
    |||||||||||||||||       | |||||||||||| ||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  13366230 aatgggttaatgttcataaaaaaattggtttagattggaatttggaagggtttagattagatccaaaaatgagtttagattggaatatgaaaggattgat 13366131  T
Q  334 gctgatga 341  Q
    | ||||||    
T  13366130 gttgatga 13366123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 39270267 - 39270195
Alignment:
Q  258 tgggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggatt 330  Q
    |||||||||||||||||||| |||  |||||||||||| |||||||| |||||||||||||| ||||||||||    
T  39270267 tgggtttagattgggatttggaagaatttagattagattcaaaaatgagtttagattggaatttgaaaggatt 39270195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 13366302 - 13366254
Alignment:
Q  162 caaatctgattccgatttttcccttttaatccggtccaaatctgctccc 210  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  13366302 caaatctgactcccatttttcccttttaatccggtccaaatctgctccc 13366254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 9244975 - 9245022
Alignment:
Q  42 ggaattggaatcaaaattggattggaattaattttccaagaacaaaaa 89  Q
    |||| |||||||||||||||||||||||| |||| |||| ||||||||    
T  9244975 ggaaatggaatcaaaattggattggaattgatttcccaacaacaaaaa 9245022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 8096099 - 8096133
Alignment:
Q  176 atttttcccttttaatccggtccaaatctgctccc 210  Q
    ||||||||||||||| |||||||||||||||||||    
T  8096099 atttttcccttttaacccggtccaaatctgctccc 8096133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 8096021 - 8096057
Alignment:
Q  53 caaaattggattggaattaattttccaagaacaaaaa 89  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  8096021 caaaattggattgaaattaatttttcaagaacaaaaa 8096057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 14509849 - 14510010
Alignment:
Q  1 aaaaacgcataaggaaacaatacagaaggaacatcgcccaaggaattggaatcaaaattggattggaattaattttccaagaacaaaaatgcataaagga 100  Q
    |||||||||||||||||||||||| |||||||| |||   ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||    
T  14509849 aaaaacgcataaggaaacaatacacaaggaacaacgcagcaggaattggaatcaaaattggtttggaatttattttccaggaacaaaaatgcatagagga 14509948  T
Q  101 acaacagtgcagcaaaaggaacaaaaacgtagcacaacatcaacacaacaaatctgctcccca 163  Q
    | | |||||||||| || ||| ||||||  |||| |||| |||||||||||||||||||||||    
T  14509949 aaaccagtgcagcataa-gaaaaaaaactcagcataacaacaacacaacaaatctgctcccca 14510010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 234 - 372
Target Start/End: Original strand, 14510128 - 14510266
Alignment:
Q  234 aatgggttaatgttcatnnnnnnntgggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaat 333  Q
    |||||||||||||||||       |||||||||||||||| ||| |||  ||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  14510128 aatgggttaatgttcataaaaaaatgggtttagattgggagttggaaggatttagattagatccaaaaatgagtttagattggaatatgaaaggattgat 14510227  T
Q  334 gctgatgatgaaggattggaattcgaaaatgagtttttt 372  Q
    | ||||| |||| |||||||||| |||||||||||||||    
T  14510228 gttgatggtgaaagattggaatttgaaaatgagtttttt 14510266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 14510056 - 14510104
Alignment:
Q  162 caaatctgattccgatttttcccttttaatccggtccaaatctgctccc 210  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  14510056 caaatctgattcccatttttcccttttaatctggtccaaatctgctccc 14510104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 234 - 369
Target Start/End: Original strand, 40145365 - 40145500
Alignment:
Q  234 aatgggttaatgttcatnnnnnnntgggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaat 333  Q
    |||||||||||||||||       || ||||| ||||| ||||| ||| ||||| |||||||||| |||||||||||||||||||| |||||||||| ||    
T  40145365 aatgggttaatgttcatcaaaaaatgagtttaaattggaatttggaagagtttaaattagatccataaatgggtttagattggaatttgaaaggattgat 40145464  T
Q  334 gctgatgatgaaggattggaattcgaaaatgagttt 369  Q
    ||||||||||||||||||||||||||||||||||||    
T  40145465 gctgatgatgaaggattggaattcgaaaatgagttt 40145500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 258 - 374
Target Start/End: Original strand, 35055944 - 35056060
Alignment:
Q  258 tgggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattc 357  Q
    |||||||||||||||||||| |||  |||||||||||||||||||| |||||||||| |||| |||||||||| ||  |||||||||| |||||  ||||    
T  35055944 tgggtttagattgggatttggaagaatttagattagatccaaaaataggtttagattagaatttgaaaggattgatattgatgatgaatgattgacattc 35056043  T
Q  358 gaaaatgagttttttat 374  Q
     ||||||||||||||||    
T  35056044 aaaaatgagttttttat 35056060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 258 - 374
Target Start/End: Original strand, 16038859 - 16038975
Alignment:
Q  258 tgggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattc 357  Q
    |||||||||||||||||||| |||  |||||||||||||||||||| |||||||||| |||| |||||||||| ||  ||| |||||| |||||| ||||    
T  16038859 tgggtttagattgggatttggaagaatttagattagatccaaaaatcggtttagatttgaatttgaaaggattgatattgacgatgaatgattggcattc 16038958  T
Q  358 gaaaatgagttttttat 374  Q
     ||||| ||||||||||    
T  16038959 aaaaattagttttttat 16038975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 261 - 364
Target Start/End: Complemental strand, 756929 - 756826
Alignment:
Q  261 gtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattcgaa 360  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||| ||||||||||  |  |||||||||| |||||  |||||||    
T  756929 gtttagattgggatttggaagaatttagattagatccaaaaatgggtttagattggaatttgaaaggattgctattgatgatgaatgattgacattcgaa 756830  T
Q  361 aatg 364  Q
    ||||    
T  756829 aatg 756826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 261 - 364
Target Start/End: Original strand, 702273 - 702376
Alignment:
Q  261 gtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattcgaa 360  Q
    ||||||||| ||||||| |||  ||||||||||||||||||||| |||||||||||||| ||||||||||  |  |||||||||| |||||| |||||||    
T  702273 gtttagattaggatttggaagaatttagattagatccaaaaatgagtttagattggaatttgaaaggattgctattgatgatgaatgattggcattcgaa 702372  T
Q  361 aatg 364  Q
    ||||    
T  702373 aatg 702376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 261 - 364
Target Start/End: Original strand, 770572 - 770675
Alignment:
Q  261 gtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattcgaa 360  Q
    ||||||||| ||||||| |||  ||||||||||||||||||||| |||||||||||||| ||||||||||  |  |||||||||| |||||| |||||||    
T  770572 gtttagattaggatttggaagaatttagattagatccaaaaatgagtttagattggaatttgaaaggattgctattgatgatgaatgattggcattcgaa 770671  T
Q  361 aatg 364  Q
    ||||    
T  770672 aatg 770675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 258 - 372
Target Start/End: Original strand, 40812236 - 40812350
Alignment:
Q  258 tgggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattc 357  Q
    |||||||| ||||||||||| |||  |||||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||||||| ||||||||||    
T  40812236 tgggtttaaattgggatttggaaggatttagattagatccaaaaataggtttagattggaatgtgaaaggattgatgttgatgatgaagaattggaattc 40812335  T
Q  358 gaaaatgagtttttt 372  Q
    |||||||||||||||    
T  40812336 gaaaatgagtttttt 40812350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 262 - 374
Target Start/End: Complemental strand, 2972196 - 2972084
Alignment:
Q  262 tttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattcgaaa 361  Q
    |||| ||||| ||||| ||| ||||||||||||||||||||||||||||||||||| | |||||||||| ||| |||||||||| |||||||||||||||    
T  2972196 tttatattggaatttggaagggtttagattagatccaaaaatgggtttagattggactttgaaaggattgatgttgatgatgaatgattggaattcgaaa 2972097  T
Q  362 atgagttttttat 374  Q
    |||||||||||||    
T  2972096 atgagttttttat 2972084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 258 - 372
Target Start/End: Complemental strand, 16962868 - 16962754
Alignment:
Q  258 tgggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattc 357  Q
    |||||||||||||||||||| |||  |||||||||||||||||||||||||||||||| ||| |||||||||| ||  |||||||||| |||||| ||||    
T  16962868 tgggtttagattgggatttggaagaatttagattagatccaaaaatgggtttagattgaaatttgaaaggattgatattgatgatgaatgattggcattc 16962769  T
Q  358 gaaaatgagtttttt 372  Q
     ||||||||||||||    
T  16962768 aaaaatgagtttttt 16962754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 261 - 372
Target Start/End: Original strand, 51598589 - 51598700
Alignment:
Q  261 gtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattcgaa 360  Q
    ||||||||||||||||| |||  |||||||||||||||||||||| ||||||||||||| ||||||||||  |  |||||||||| |||||| |||||||    
T  51598589 gtttagattgggatttggaagaatttagattagatccaaaaatggatttagattggaatttgaaaggattgctattgatgatgaatgattggcattcgaa 51598688  T
Q  361 aatgagtttttt 372  Q
    ||||||||||||    
T  51598689 aatgagtttttt 51598700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 40812155 - 40812189
Alignment:
Q  176 atttttcccttttaatccggtccaaatctgctccc 210  Q
    |||||||||||||||||||||||||||||||||||    
T  40812155 atttttcccttttaatccggtccaaatctgctccc 40812189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 234 - 374
Target Start/End: Original strand, 16834 - 16974
Alignment:
Q  234 aatgggttaatgttcatnnnnnnntgggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaat 333  Q
    |||||||||||||||||       ||||| || ||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||||| ||    
T  16834 aatgggttaatgttcataaaaatatgggtatatattgggatttggaagggtttagattacatccaaaaatgagtttagattggaatatgaaaggattgat 16933  T
Q  334 gctgatgatgaaggattggaattcgaaaatgagttttttat 374  Q
      |||||||||||||||||||||  ||||||||||||||||    
T  16934 attgatgatgaaggattggaatttaaaaatgagttttttat 16974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 16601 - 16715
Alignment:
Q  48 ggaatcaaaattggattggaattaattttccaagaacaaaaatgcataaaggaacaacagtgcagcaaaaggaacaaaaacgtagcacaacatcaacaca 147  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| | |||||||||| || ||||||||||| |||| |||| || ||||    
T  16601 ggaaacaaaattggtttggaattaattttccaagaacaaaaatgcatagaggaaaaccagtgcagcataa-gaacaaaaacgcagcataacaacagcaca 16699  T
Q  148 acaaatctgctcccca 163  Q
    ||||||||||||||||    
T  16700 acaaatctgctcccca 16715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 16762 - 16810
Alignment:
Q  162 caaatctgattccgatttttcccttttaatccggtccaaatctgctccc 210  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  16762 caaatctgattcccatttttcccttttaatccggttcaaatctgctccc 16810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 258 - 372
Target Start/End: Complemental strand, 21710036 - 21709922
Alignment:
Q  258 tgggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattc 357  Q
    |||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||| ||||||||||  |  |||||||||| |||||| ||||    
T  21710036 tgggtttagattgggatttggaagaatttagattagatccaaaaatgggtttagattggaatttgaaaggattgctattgatgatgaatgattggcattc 21709937  T
Q  358 gaaaatgagtttttt 372  Q
    |||||||||||||||    
T  21709936 gaaaatgagtttttt 21709922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 261 - 364
Target Start/End: Original strand, 26025518 - 26025621
Alignment:
Q  261 gtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattcgaa 360  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||| ||||||||||  |  |||||||||| |||||| |||||||    
T  26025518 gtttagattgggatttggaagaatttagattagatccaaaaatgggtttagattggaatttgaaaggattgctattgatgatgaatgattggcattcgaa 26025617  T
Q  361 aatg 364  Q
    ||||    
T  26025618 aatg 26025621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 234 - 326
Target Start/End: Complemental strand, 33458794 - 33458702
Alignment:
Q  234 aatgggttaatgttcatnnnnnnntgggtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaag 326  Q
    |||||||||||||||||       || ||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  33458794 aatgggttaatgttcataaaaaaatgagtttaaattggaatttggaagagtttagattagatccaaaaatgggtttagattggaatttgaaag 33458702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 29187574 - 29187621
Alignment:
Q  42 ggaattggaatcaaaattggattggaattaattttccaagaacaaaaa 89  Q
    |||| |||||||||||||||||||||||| |||| |||| ||||||||    
T  29187574 ggaaatggaatcaaaattggattggaattgatttcccaacaacaaaaa 29187621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 261 - 364
Target Start/End: Complemental strand, 123864 - 123761
Alignment:
Q  261 gtttagattgggatttgaaagtgtttagattagatccaaaaatgggtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattcgaa 360  Q
    ||||||||||||||||| |||  |||||||||||| ||||||||||||||||||||||| ||||||||||  |  |||||||||| |||||| |||||||    
T  123864 gtttagattgggatttggaagaatttagattagattcaaaaatgggtttagattggaatttgaaaggattgctattgatgatgaatgattggcattcgaa 123765  T
Q  361 aatg 364  Q
    ||||    
T  123764 aatg 123761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 364
Target Start/End: Complemental strand, 134690 - 134632
Alignment:
Q  306 gtttagattggaatatgaaaggattaatgctgatgatgaaggattggaattcgaaaatg 364  Q
    |||||||||||||| ||||||||||  |  |||||||||| |||||| |||||||||||    
T  134690 gtttagattggaatttgaaaggattgctattgatgatgaatgattggcattcgaaaatg 134632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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