View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_20 (Length: 468)
Name: NF15962_low_20
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 463
Target Start/End: Complemental strand, 5052015 - 5051562
Alignment:
| Q |
19 |
tcatgtcccctcaatcttctcctcgtgattggggccgggatcaatcaagtcagcaataatacataatttaacagttgggcaaagggctatcataattgtt |
118 |
Q |
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| T |
5052015 |
tcatgtcccctcaatcttctcctcgtgatcggggccgggatcaatcaagtcagcaacaatacataatttgacagttgggcaaagggctatcataattgtt |
5051916 |
T |
|
| Q |
119 |
caactaagtatcaaaatccattatccaattaaaatttggtaggtaatagctcgtgaacatacaatctattagcaatatatactacaatcaacatggagaa |
218 |
Q |
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||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5051915 |
caactaagtatcagaatcaattatccaatttaaatttggtaggtaatagctcgtgaacatacaatctattagcaatatatactacaatcaacatggagaa |
5051816 |
T |
|
| Q |
219 |
cttatcagatgatatatggatggagatatggagtcgtgtccatacaagacaggagtgagatgcaaatccatcgcaaagcgcttct------taatctcac |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5051815 |
cttatcagatgatatatggatggagatatggagtcgtgtccatacaagacaggagtgagatgcaaatccatcgcaaagcgcttcttagcaataatctcac |
5051716 |
T |
|
| Q |
313 |
agctccaattcaatgaacgatcagtttttcatcaccaatatactttggtccaacaaatga---aagaagaaaaccagaaaagtagcacttcaattttatc |
409 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5051715 |
agctccaattcaatgaacggccagttcttcatcaccaatatactttggtccaacaaatgaaagaagaagaaaaccagaaaagtagcacttcaattttatc |
5051616 |
T |
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| Q |
410 |
tcaaagcataaactcctcgtatcgttgtcatccaatctccatctctctgctcct |
463 |
Q |
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| T |
5051615 |
tcaaagcgtaaactcctcgtatggttctcatccaatctccatctttctactcct |
5051562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 119 - 463
Target Start/End: Original strand, 51273452 - 51273805
Alignment:
| Q |
119 |
caactaagtatcaaaatccattatccaattaaaatttggtaggtaatagctcgtgaacata-caatctattagcaatatatactacaatcaacatggaga |
217 |
Q |
| |
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|||| |||||||| |||| ||||||||||||||||||||||| | ||||||| |||||||| |||| | ||||||||||||||| |||||||||||||| |
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| T |
51273452 |
caaccaagtatcagaatcgattatccaattaaaatttggtagcttatagctcttgaacataacaatattctagcaatatatactaaaatcaacatggaga |
51273551 |
T |
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| Q |
218 |
acttatcagatgatatatggatggagatatggagtcgtg-tccatacaagacaggagtgagatgcaaatccatcgcaaagcgcttc------ttaatctc |
310 |
Q |
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| T |
51273552 |
atttatcagatgatttattgatagagatatggagtcgtgtttcgtacaagacagcagtgagttgcaaatccatctcaaagcgtttcttagctttaatctc |
51273651 |
T |
|
| Q |
311 |
acagctccaattcaatgaacgatcagtttttcatcaccaatatactttggtccaacaaatgaaag---aagaaaaccag-aaaagtagcacttcaatttt |
406 |
Q |
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|||||||||||||| |||||||||| || ||||||||| |||||||| ||||||||||||||| ||||||||||| |||| | ||||||||||||| |
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| T |
51273652 |
acagctccaattcattgaacgatcaattcttcatcacc---atactttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaatttt |
51273748 |
T |
|
| Q |
407 |
atctcaaagcataaactcctcgtatcgttgtcatccaatctccatctctctgctcct |
463 |
Q |
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|||||||||| |||||| ||| | ||||| ||| | |||||| |||| ||| ||||| |
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|
| T |
51273749 |
atctcaaagcgtaaacttctcatttcgttctcaccaaatctcaatctttctactcct |
51273805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 305
Target Start/End: Original strand, 14907599 - 14907717
Alignment:
| Q |
188 |
tagcaatatatactacaatcaacatggagaacttatcagatgatatatggatggagatatggagtcgtg-tccatacaagacaggagtgagatgcaaatc |
286 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||| ||| ||| |||| ||||| ||||| | ||||||| ||| |||||| | |||||| |
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| T |
14907599 |
tagcaatatatacttaaatcaacatggagaatttatcagatgatttattgatagagacatggattcgtgtttcatacaaaacatcagtgagttacaaatc |
14907698 |
T |
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| Q |
287 |
catcgcaaagcgcttctta |
305 |
Q |
| |
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|||| |||||||| ||||| |
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| T |
14907699 |
catctcaaagcgcatctta |
14907717 |
T |
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