View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_low_22 (Length: 461)

Name: NF15962_low_22
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_low_22
NF15962_low_22
[»] chr7 (6 HSPs)
chr7 (15-442)||(46629676-46630103)
chr7 (29-440)||(46637512-46637923)
chr7 (39-441)||(46618816-46619218)
chr7 (31-440)||(46642886-46643292)
chr7 (138-440)||(46176265-46176561)
chr7 (54-95)||(46176561-46176602)
[»] chr1 (1 HSPs)
chr1 (29-442)||(15769302-15769709)
[»] chr3 (1 HSPs)
chr3 (197-442)||(18375981-18376226)


Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 15 - 442
Target Start/End: Original strand, 46629676 - 46630103
Alignment:
Q  15 gaagaacagtcggacgttttcagcaccaacttgcaaatctttgtcttctcttggaccgagtgatatattacaatctttgacaggaggatttcggctgagc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46629676 gaagaacagtcggacgttttcagcaccaacttgcaaatctttgtcttctcttggaccgagtgatatattacaatctttgacaggaggatttcggctgagc 46629775  T
Q  115 aaaaccaaaaataatgaactcttctgggaagctgtttggccgcgcttactagcaagaggatggcactctgagcaaacaaagtatcgaggatgtgttacct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46629776 aaaaccaaaaataatgaactcttctgggaagctgtttggccgcgcttactagcaagaggatggcactctgagcaaacaaagtatcgaggatgtgttacct 46629875  T
Q  215 ccgatgattatctggtttttcttattcctggtgttcagaagttttcaaggagaaaactagtgaaaggtaaccattactttgattcagttagcgatgtctt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46629876 ccgatgattatctggtttttcttattcctggtgttcagaagttttcaaggagaaaactagtgaaaggtaaccattactttgattcagttagcgatgtctt 46629975  T
Q  315 gaaaaaagtagtagctgaaccgaatattctcgtccttaaagaagaagaagctgctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaat 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46629976 gaaaaaagtagtagctgaaccgaatattctcgtccttaaagaagaagaagctgctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaat 46630075  T
Q  415 ggacatgatttatctgacgatcatcgcc 442  Q
    ||||||||||||||||||||||||||||    
T  46630076 ggacatgatttatctgacgatcatcgcc 46630103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 29 - 440
Target Start/End: Original strand, 46637512 - 46637923
Alignment:
Q  29 cgttttcagcaccaacttgcaaatctttgtcttctcttggaccgagtgatatattacaatctttgacaggaggatttcggctgagcaaaaccaaaaataa 128  Q
    ||||| |||||||| |||||||||||||||||||||||||||  ||||| ||| | |||| ||||||||||   |||||||||||||||||||||| |||    
T  46637512 cgtttccagcaccagcttgcaaatctttgtcttctcttggacttagtgagataattcaatatttgacagga---tttcggctgagcaaaaccaaaagtaa 46637608  T
Q  129 tgaactcttctgggaagctgtttggccgcgcttactagcaagaggatggcactctgagcaaacaaagtatcgaggatgtgttacctccgatgattatctg 228  Q
    ||| ||||||||||||||||||||||| ||||| || | |||||| ||||||||||||||| ||||||||||||| | |||||||||| ||||| |||||    
T  46637609 tgatctcttctgggaagctgtttggccccgcttgctgggaagaggttggcactctgagcaaccaaagtatcgaggctatgttacctccaatgataatctg 46637708  T
Q  229 gtttttcttattcctggtgttcagaagttttcaaggagaaaactagtgaaaggtaaccattactttgattcagttagcgatgtcttgaaaaaagtagtag 328  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| |||||||||| ||||||||| |    
T  46637709 gtttttcttattcctggtgttgagaagttttcaaggagaaaacttgtgaaaggtgaccattactttgattctgttagtgatgtcttgagaaaagtagttg 46637808  T
Q  329 ctgaaccgaatattctcgtcctta---aagaagaagaagctgctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaatggacatgattt 425  Q
    ||||||||||||||||| | || |   ||||||||||||  || ||||| |||||||||||||||||||||| ||||||  ||||||||| | |||||||    
T  46637809 ctgaaccgaatattctcctgctcaaagaagaagaagaagaagccaaagttggtagctgcaatgaggaagagccagaaaatggatcaaatgaagatgattt 46637908  T
Q  426 atctgacgatcatcg 440  Q
     ||||||||||||||    
T  46637909 gtctgacgatcatcg 46637923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 39 - 441
Target Start/End: Original strand, 46618816 - 46619218
Alignment:
Q  39 accaacttgcaaatctttgtcttctcttggaccgagtgatatattacaatctttgacaggaggatttcggctgagcaaaaccaaaaataatgaactcttc 138  Q
    |||| |||||||| ||||||||||||||||||| ||||| ||| | |||| ||||||||||   |||||||||||||||||||||| |||||| ||||||    
T  46618816 accagcttgcaaagctttgtcttctcttggacctagtgagataattcaatatttgacagga---tttcggctgagcaaaaccaaaagtaatgatctcttc 46618912  T
Q  139 tgggaagctgtttggccgcgcttactagcaagaggatggcactctgagcaaacaaagtatcgaggatgtgttacctccgatgattatctggtttttctta 238  Q
    ||||| ||||||||||| |||||||| |||||||| ||||||||||||||| ||||||||||| | | |||||| ||| |||||||||||||||||||||    
T  46618913 tgggaggctgtttggccccgcttactggcaagaggttggcactctgagcaaccaaagtatcgatgctatgttacttccaatgattatctggtttttctta 46619012  T
Q  239 ttcctggtgttcagaagttttcaaggagaaaactagtgaaaggtaaccattactttgattcagttagcgatgtcttgaaaaaagtagtagctgaaccgaa 338  Q
    |||| |||||| |||||||||| ||||||||||| ||||||||| |||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||    
T  46619013 ttcccggtgttgagaagttttcgaggagaaaacttgtgaaaggtgaccattactttgattctgttagtgatgtcttgagaaaagtagttgctgaaccgaa 46619112  T
Q  339 tattctcgtccttaaagaagaaga---agctgctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaatggacatgatttatctgacgat 435  Q
    ||||||||| || |||||||||||   ||  || ||| | |||||||||||||||||||| |  |||||  ||||||||| | ||||| | ||| | |||    
T  46619113 tattctcgtgctcaaagaagaagaaggagaagccaaatttggtagctgcaatgaggaagatcccgaaaatggatcaaatgaagatgatctgtctaaggat 46619212  T
Q  436 catcgc 441  Q
    ||||||    
T  46619213 catcgc 46619218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 31 - 440
Target Start/End: Complemental strand, 46643292 - 46642886
Alignment:
Q  31 ttttcagcaccaacttgcaaatctttgtcttctcttggaccgagtgatatattacaatctttgacaggaggatttcggctgagcaaaaccaaaaataatg 130  Q
    |||||||||| |||||||||| || |||||||| ||||||| ||||||||| | ||||| |||||||||||||||| ||||||||||||||||| | | |    
T  46643292 ttttcagcacaaacttgcaaagctctgtcttcttttggacctagtgatataattcaatccttgacaggaggatttcagctgagcaaaaccaaaagtgacg 46643193  T
Q  131 aactcttctgggaagctgtttggccgcgcttactagcaagaggatggcactctgagcaaacaaagtatcgaggatgtgttacctccgatgattatctggt 230  Q
    | ||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||| ||| ||||| ||| | |||||||||| | |||||||||||    
T  46643192 atctcttctgggaagctgtttggcctcgattactggcaagaggttggcactctgagcaaccaatgtatcaaggctatgttacctccaaagattatctggt 46643093  T
Q  231 ttttcttattcctggtgttcagaagttttcaaggagaaaactagtgaaaggtaaccattactttgattcagttagcgatgtcttgaaaaaagtagtagct 330  Q
     |||||||||||||||||| | |||||||| ||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||| ||||| ||||||    
T  46643092 ctttcttattcctggtgttgataagttttcgaggagaaaacttgtgaaaggtgatcattactttgattctgttagcgatgtcttgaacaaagtggtagct 46642993  T
Q  331 gaaccgaatattctcgtccttaaagaagaagaagctgctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaatggacatgatttatctg 430  Q
    |||||||||||||| |  ||| |||| ||||||    |||||||    ||||||||||||||| ||| ||||||| || |||||| | |||||||||| |    
T  46642992 gaaccgaatattcttgagcttgaagaggaagaa---tctaaagttcacagctgcaatgaggaacagccagaaaagggaacaaatgaagatgatttatcgg 46642896  T
Q  431 acgatcatcg 440  Q
    | ||||||||    
T  46642895 atgatcatcg 46642886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 138 - 440
Target Start/End: Complemental strand, 46176561 - 46176265
Alignment:
Q  138 ctgggaagctgtttggccgcgcttactagcaagaggatggcactctgagcaaacaaagtatcgaggatgtgttacctccgatgattatctggtttttctt 237  Q
    |||||||||||||||||| |||||  | |||||||| ||||||||||||||| ||||||||||||| | | |||||||| | |||||| ||||||||||     
T  46176561 ctgggaagctgtttggccccgcttgttggcaagaggttggcactctgagcaaccaaagtatcgaggctatcttacctcccaagattatttggtttttctc 46176462  T
Q  238 attcctggtgttcagaagttttcaaggagaaaactagtgaaaggtaaccattactttgattcagttagcgatgtcttgaaaaaagtagtagctgaaccga 337  Q
    |||||||||||| |||||||||||||||||||||| ||||||||| | |||||||||||||  ||||| ||||||||||  ||||||||||||||||| |    
T  46176461 attcctggtgttgagaagttttcaaggagaaaacttgtgaaaggtgatcattactttgattatgttagtgatgtcttgagcaaagtagtagctgaaccta 46176362  T
Q  338 atattctcgtccttaaagaagaagaagctgctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaatggacatgatttatctgacgatca 437  Q
    |||||||||| ||  ||||||||      |||||||| ||||||| |||||||||||| | ||||||| ||||||||| | |||||||||||||||||||    
T  46176361 atattctcgtgctcgaagaagaa------gctaaagttggtagctacaatgaggaagaaccagaaaagggatcaaatgaagatgatttatctgacgatca 46176268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 46176602 - 46176561
Alignment:
Q  54 tttgtcttctcttggaccgagtgatatattacaatctttgac 95  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  46176602 tttgtcttctcttggaccgagtgaaataatacaatctttgac 46176561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 29 - 442
Target Start/End: Complemental strand, 15769709 - 15769302
Alignment:
Q  29 cgttttcagcaccaacttgcaaatctttgtcttctcttggaccgagtgatatattacaatctttgacaggaggatttcggctgagcaaaaccaaaaataa 128  Q
    |||||| |||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||||||| ||||| |||||||||||||||||||||  |||    
T  15769709 cgtttttagcaccaacttgcaaagctttgtcttctcttggacttagtgatataatacaatctttgactggagggtttcggctgagcaaaaccaaatgtaa 15769610  T
Q  129 tgaactcttctgggaagctgtttggccgcgcttactagcaagaggatggcactctgagcaaacaaagtatcgaggatgtgttacctccgatgattatctg 228  Q
    ||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||| ||||||| | | |||||||| | |||||| ||    
T  15769609 tgatctcttctgggaagctgtttggcctcgcttactggcaagaggttggcactctgagcaaccaaagaatcgaggctatattacctccaaagattatttg 15769510  T
Q  229 gtttttcttattcctggtgttcagaagttttcaaggagaaaactagtgaaaggtaaccattactttgattcagttagcgatgtcttgaaaaaagtagtag 328  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||| || |||||| | |||||||||||||| ||||| ||||||||||  ||||||| ||    
T  15769509 gtttttcttattcctggtgttgagaagttttcgaggaggaaacttgtaaaaggtcatcattactttgattctgttagtgatgtcttgagcaaagtagcag 15769410  T
Q  329 ctgaaccgaatattctcgtccttaaagaagaagaagctgctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaatggacatgatttatc 428  Q
    ||||||||||||||||||| ||    || ||||||||||   |||| |||||||| |||||||||| || ||||||| ||||||||| | ||||| ||||    
T  15769409 ctgaaccgaatattctcgtgct---cgaggaagaagctg---aagttggtagctgtaatgaggaagggccagaaaagggatcaaatgaagatgatgtatc 15769316  T
Q  429 tgacgatcatcgcc 442  Q
    ||| ||||||||||    
T  15769315 tgatgatcatcgcc 15769302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 197 - 442
Target Start/End: Complemental strand, 18376226 - 18375981
Alignment:
Q  197 atcgaggatgtgttacctccgatgattatctggtttttcttattcctggtgttcagaagttttcaaggagaaaactagtgaaaggtaaccattactttga 296  Q
    ||||||||| || ||||| ||||||||||||||||||||||||||| || ||| ||||||||||||| |||||||||||||||||| |||||||||||||    
T  18376226 atcgaggatatgctaccttcgatgattatctggtttttcttattcccggggttgagaagttttcaagaagaaaactagtgaaaggtgaccattactttga 18376127  T
Q  297 ttcagttagcgatgtcttgaaaaaagtagtagctgaaccgaatattctcgtccttaaagaagaagaagctgctaaagtcggtagctgcaatgaggaagag 396  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  18376126 ttcagttagcgatgttttgaaaaaagtagtagctgaaccgaatattctcgtcctcaaagaagaagaagcagctaaagtcggtagctgcaatgaggaagag 18376027  T
Q  397 ctagaaaagagatcaaatggacatgatttatctgacgatcatcgcc 442  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||    
T  18376026 ctagaaaaaggatcaaatggacatgatttatctgacgatcatcgcc 18375981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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