View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_24 (Length: 459)
Name: NF15962_low_24
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_24 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 20 - 442
Target Start/End: Complemental strand, 29569174 - 29568752
Alignment:
| Q |
20 |
taaactgagtcgaataagctcacagacttcgcagcagcagagtaaacatgccatttttgtgtgctgtctgagccacccaaaacataagccacgcttcctg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29569174 |
taaactgagtcgaataagctcacagacttcgcagcagcagagtaaacatgccatttttgtgtgctgtctgagccacccaaaacataagccacgcttcctg |
29569075 |
T |
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| Q |
120 |
ttccaagcttcgcaaagtagctatcaaggactgctacttcctcggagaagctgcgatgaggaaaggactgagcacttggaaaagtgaaacttccacgggt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29569074 |
ttccaagcttcgcaaagtagctatcaaggactgctacttcctcggagaagctgcgatgaggaaaggactgagcacttggaaaagtgaaacttccacgggt |
29568975 |
T |
|
| Q |
220 |
gtatcttaccgatcgaacagttagtccaagcgcctcggatagcttcaatatcggtgggattgaaagcagcaatttggtagtaccacaggttttgattatg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568974 |
gtatcttaccgatcgaacagttagtccaagcgcctcggatagcttcaatatcggtgggattgaaagcagcaatttggtagtaccacaggttttgattatg |
29568875 |
T |
|
| Q |
320 |
atcttgtatggataaacaaaaaggctggattcagagagaacataagagtcaaccttatcatctgacagtgaggaaacaatgatgcattccgcaggtgcta |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29568874 |
atcttgtatggataaacaaaaaggctggattcagagagaacataagagtcaaccttatcatttgacagtgaggaaacaatgatgcattccgcaggtgcta |
29568775 |
T |
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| Q |
420 |
gaatctcgtctaactgggatttt |
442 |
Q |
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| T |
29568774 |
gaatctcgtctaactgggatttt |
29568752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 263 - 372
Target Start/End: Complemental strand, 4459 - 4350
Alignment:
| Q |
263 |
ttcaatatcggtgggattgaaagcagcaatttggtagtaccacaggttttgattatgatcttgtatggataaacaaaaaggctggattcagagagaacat |
362 |
Q |
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|||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| ||||||| |
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| T |
4459 |
ttcaatatgggtgggattgcaagcagtaatttggtagtaccacaggttttgattatgatcttgtaggcataaacaaaaaggctggactcagacagaacat |
4360 |
T |
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| Q |
363 |
aagagtcaac |
372 |
Q |
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| T |
4359 |
aggagtcaac |
4350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 232
Target Start/End: Original strand, 5903040 - 5903140
Alignment:
| Q |
132 |
caaagtagctatcaaggactgctacttcctcggagaagctgcgatgaggaaaggactgagcacttggaaaagtgaaacttccacgggtgtatcttaccga |
231 |
Q |
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|||| ||||| ||||| || || ||||||||||||||||| |||||||| || || ||||| | || ||| |||| ||||| || |||||||| ||||| |
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| T |
5903040 |
caaaatagctgtcaagaacagcaacttcctcggagaagcttcgatgagggaatgattgagctccagggaaaatgaagcttccgcgagtgtatctcaccga |
5903139 |
T |
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| Q |
232 |
t |
232 |
Q |
| |
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| T |
5903140 |
t |
5903140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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