View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_25 (Length: 455)
Name: NF15962_low_25
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 8 - 265
Target Start/End: Original strand, 45196879 - 45197145
Alignment:
| Q |
8 |
ccaagaaaattttaacgaaaagaaagaatttttattgtattcaattaatttttcaatagagattaacat---------cgttagatggtgatgaaaactt |
98 |
Q |
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| T |
45196879 |
ccaagaaaattttaacgaaaagaaagaattttcattgtattcaattgatttctcaatggagattaatattaacatcgtcgttagatggtgatgaaaactt |
45196978 |
T |
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| Q |
99 |
tgtacctataacatgacaacaacaaaaagatattgtcaatgtaaattttttacaccggcgattaatcataaccgttggatcaatattaacatttgacttt |
198 |
Q |
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| T |
45196979 |
tgtacctataacatgacaaaaacaaaaagatattgtcaatgtaaattttttacaccggcgattaatcataaccattggatcaatattaacatttgacttt |
45197078 |
T |
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| Q |
199 |
tatcataatcatttataaaattagaaacatgaatggctgtgacatattaataatgtagggcttttta |
265 |
Q |
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| T |
45197079 |
tatcataatcattataaaaaatagaaacatgaatgacagtgacatattaataatgtagggcttttta |
45197145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 259 - 352
Target Start/End: Original strand, 45197237 - 45197330
Alignment:
| Q |
259 |
ctttttaaaaagacagcaaagccaagccctattctcttatcaatttatcaaataatttttattgcctgttactgttagtgcctgtttgaatcac |
352 |
Q |
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| T |
45197237 |
ctttttaaaaagacagcaaagccaagccctattctcttatcaatttatcaaataatttttattgcctgttactgttagtgcctgtttgaatcac |
45197330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 2101174 - 2101218
Alignment:
| Q |
162 |
aatcataaccgttggatcaatattaacatttgacttttatcataa |
206 |
Q |
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| T |
2101174 |
aatcataaccgttagatcattagaaacatttgacttttatcataa |
2101218 |
T |
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