View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_27 (Length: 445)
Name: NF15962_low_27
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_27 |
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| [»] scaffold0122 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 39 - 437
Target Start/End: Complemental strand, 1051912 - 1051502
Alignment:
| Q |
39 |
gcggatatcggtagttgggttagtggtcaatgggtcatgtggcggtggaagaggtcgttgtttgtatgggaagaagaagttttcactgaattggaagcta |
138 |
Q |
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| T |
1051912 |
gcggatatcggtagttgggttagtggtcaatgggtcatgtggcggcggaagaggtcgttgtttgtatgggaagaag---ttttcaatgaattggaagcta |
1051816 |
T |
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| Q |
139 |
cccgtggtgatgttggacagaacttagtaggaggtagtgatggggtggatttggttgttagaaaaatgttgaggggttctcggttagttcttgttttaaa |
238 |
Q |
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| T |
1051815 |
cccgtggtggtgttggacagaacttagtaggaggtagtgatggggtggatttggttgttagaaaaatgttgaggggttctcggttagttcttgttttaaa |
1051716 |
T |
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| Q |
239 |
catttagttttgcttttatatgttcaatctagtgatctggttttcataaaaggctttggaaaaggt---------------atggtttggagattacttc |
323 |
Q |
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| T |
1051715 |
catttggttttgcttttatatgttcaatctagtgatctggttttcataaaaggctttggaaaaggtatggaaaacaaaattatggtttggagattacttc |
1051616 |
T |
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| Q |
324 |
aagggagactagcatctaaagaggctttggctagaagaggggtgatgtctaccattatatgtcttgtgttttttgctcaattaactttgagcttagtaat |
423 |
Q |
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| T |
1051615 |
aagggagactagcatctaaagaggctttggctagaagaggggtgatgtctaccattatatgtcttgtgttttttgctcaattaactttgagcttagtaat |
1051516 |
T |
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| Q |
424 |
catttcttcatctc |
437 |
Q |
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| T |
1051515 |
catttcttcttctc |
1051502 |
T |
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Target: scaffold0122 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 423
Target Start/End: Original strand, 1631 - 1754
Alignment:
| Q |
304 |
tatggtttggagattacttcaagggagactagcatctaaagaggctttggctagaagaggggtgatgtctaccatt----atatgtcttgtgttttttgc |
399 |
Q |
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| T |
1631 |
tatggtttggagattactttaagggggactagcaactaaagaggatttacttataagacgggtattgtctaccattcatgatatgtcttgtgttttttgc |
1730 |
T |
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| Q |
400 |
tcaattaactttgagcttagtaat |
423 |
Q |
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|||| ||| ||||| |||||||| |
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| T |
1731 |
tcaaataatattgagtttagtaat |
1754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 30390922 - 30390972
Alignment:
| Q |
324 |
aagggagactagcatctaaagaggctttggctagaagaggggtgatgtcta |
374 |
Q |
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| T |
30390922 |
aagggagactagcaattagagatgctttggctagaagaggggtaatgtcta |
30390972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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