View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_28 (Length: 444)
Name: NF15962_low_28
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 9 - 427
Target Start/End: Complemental strand, 9078105 - 9077687
Alignment:
| Q |
9 |
gattatactttaacctagtagatgattgttgcatttgaataaccttaggagttaggacacatctttgttaaattcatatatatttattacaggaggatga |
108 |
Q |
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| T |
9078105 |
gattatactttaacctagtagatgagtgttacatttgaataaccttaggagttaggacacatctttgttaaattcatatatatttattacaggaggatga |
9078006 |
T |
|
| Q |
109 |
acttctccgcacggcatgtggaacaccgaattacgttgctcctgaggtagtactatttctttgtggatcaaatgaaagactcattttgttttctcaaact |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9078005 |
acttctccgcacggcatgtggaacaccgaattacgttgctcctgaggtagtactttttctttgtggatcaaatgaaagactcattttgttttctcaaact |
9077906 |
T |
|
| Q |
209 |
aaagtaaatgttaattggtgtgtccttttgtatcaggtgcttaatgatagaggttatgttggttcttcatctgatatttggtcatgtggagtcattctct |
308 |
Q |
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| T |
9077905 |
aaagtaaatgttaattggtgtttccttttgtatcaggtgcttaatgatagaggttatgttggttcttcatctgatatttggtcatgtggagtcattctct |
9077806 |
T |
|
| Q |
309 |
ttgtacttatggccgggtacttgccgttcgacgagccaaatctaatttcactgtatagaagagtgagtactttcattatatatagtaatccaaaagaata |
408 |
Q |
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| T |
9077805 |
ttgtacttatggccgggtacttgccgttcgacgagccaaatctaatttcactgtatagaagagtgagtactttcattatatatagtaatccaaaagaata |
9077706 |
T |
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| Q |
409 |
aaaagtgaaacagaagttg |
427 |
Q |
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| T |
9077705 |
aaaagtgaaacagaagttg |
9077687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 427
Target Start/End: Complemental strand, 9086882 - 9086457
Alignment:
| Q |
9 |
gattatactttaacctagtagatgattgttgcatttgaataaccttaggagttaggacacatctttgttaaattcatatatatttattacaggaggatga |
108 |
Q |
| |
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||||||||||||||| ||||||||| |||| |||||| |||||||||||| | || |||||||||||||||||||| |||||| |||||||||| |
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| T |
9086882 |
gattatactttaaccgagtagatgagtgttacatttgcataaccttaggact-------cacctttgttaaattcatatatacttattataggaggatga |
9086790 |
T |
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| Q |
109 |
acttctccgcacggcatgtggaacaccgaattacgttgctcctgaggtagtactatttctttgtggatcaaatgaaagactcattttgttttctcaaact |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9086789 |
acttctccgcacggcatgtggaacaccgaattacgttgctcctgaggtagtactttttctttgtggatcaaatgaaagactcattttgttttctcaaact |
9086690 |
T |
|
| Q |
209 |
aaagtaaatgttaattggtgtgtccttttgtatcaggtgcttaatgatagaggttatgttggttcttcatctgatatttggtcatgtggagtcattctct |
308 |
Q |
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| T |
9086689 |
aaagtaaatgttaattggtgtatccatttgtatcaggtgcttaatgatagaggttatgttggttcttcatctgatatttggtcatgtggagtcattctct |
9086590 |
T |
|
| Q |
309 |
ttgtacttatggccgggtacttgccgttcgacgagccaaatctaatttcactgtatagaagagtgagtactttcat--------------tatatatagt |
394 |
Q |
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| T |
9086589 |
ttgtacttatggccgggtacttgccgttcgatgagccaaatctaattgcactgtatagaaaagtgagtgatttcataatatatatatatatatatatagt |
9086490 |
T |
|
| Q |
395 |
aatccaaaagaataaaaagtgaaacagaagttg |
427 |
Q |
| |
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| T |
9086489 |
aatccaaaagaataaaaagtgaaacagaagttg |
9086457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 71 - 427
Target Start/End: Complemental strand, 6418031 - 6417661
Alignment:
| Q |
71 |
ctttgttaaattcatatatatttattacaggaggatgaacttctccgcacggcatgtggaacaccgaattacgttgctcctgaggtagtactatttcttt |
170 |
Q |
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| T |
6418031 |
ctttgttaaattcatatatacttattataggaggatgaacttctccgcacggcatgtggaacaccgaattacgttgctcctgaggtagtactttttcttt |
6417932 |
T |
|
| Q |
171 |
gtggatcaaatgaaagactcattttgttttctcaaactaaagtaaatgttaattggtgtgtccttttgtatcaggtgcttaatgatagaggttatgttgg |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
6417931 |
gtggatcaaatgaaagactcattttgttttctcaaactaaagtaaatgttaattggtgtatccatttgtatcaggtgcttaatgatagaggttatgttgg |
6417832 |
T |
|
| Q |
271 |
ttcttcatctgatatttggtcatgtggagtcattctctttgtacttatggccgggtacttgccgttcgacgagccaaatctaatttcactgtatagaaga |
370 |
Q |
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| T |
6417831 |
ttcttcatctgatatttggtcatgtggagtcattctctttgtacttatggccgggtacttgccgttcgatgagccaaatctaattgcactgtatagaaaa |
6417732 |
T |
|
| Q |
371 |
gtgagtactttcat--------------tatatatagtaatccaaaagaataaaaagtgaaacagaagttg |
427 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6417731 |
gtgagtgatttcataatatatatatatatatatatagtaatccaaaagaataaaaagtgaaacagaagttg |
6417661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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