View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_30 (Length: 436)
Name: NF15962_low_30
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 12 - 420
Target Start/End: Complemental strand, 47068364 - 47067956
Alignment:
| Q |
12 |
atgaaaaccttctcagagccacctcttcattcaaccctaggttcccagtgtccattagccttttgtaccttaatacccgaatcttgtaaacgtaatggat |
111 |
Q |
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| T |
47068364 |
atgaaaaccttctcagagtcacctcttcattcaaccctaggttcccagtgtccgttagccttttgtaccttaatacccgaatcttgtaaacgtaatggat |
47068265 |
T |
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| Q |
112 |
ggatattaaaatcgctgaacacaaaagcgcagtaaaaattgatgtaacaattataatatgcaccactgctttggtacttgtaattagaggtggctgtgga |
211 |
Q |
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| T |
47068264 |
ggatattaaaatcgctgaacacaaaagcgcagtaaaaattgatgtaacaatgataatatgcaccactgctttggtacttgtaattagaggtggctgtgga |
47068165 |
T |
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| Q |
212 |
taaaaaagtgtatcattccccttccggttttcgatgctgccatttcccacctttatgtatgctgctgcaggcgagccgtaggcttcatgtgtccttgtga |
311 |
Q |
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| T |
47068164 |
taaaaaagtgtatcattccccttccagttttcgatgctgccatttcccacctttatgtatgctgctgcaggcgagtcgtcggcttcatgtgtccttgtga |
47068065 |
T |
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| Q |
312 |
catatctcaaaggcaacccttgtttcttgcatctttcttcctcatacagtgcagcccaacagttgcaatcaaccaaacaagcaaatgagcattctttttc |
411 |
Q |
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| T |
47068064 |
catatctcaaaggcaacccttgtttcttgcatctttcttcctcatacagtgcagcccaacagttgcaatcaaccaaacaagcaaatgagcattctttttc |
47067965 |
T |
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| Q |
412 |
cgataatat |
420 |
Q |
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| T |
47067964 |
cgataatat |
47067956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 293 - 407
Target Start/End: Original strand, 47076244 - 47076358
Alignment:
| Q |
293 |
gcttcatgtgtccttgtgacatatctcaaaggcaacccttgtttcttgcatctttcttcctcatacagtgcagcccaacagttgcaatcaaccaaacaag |
392 |
Q |
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| T |
47076244 |
gcttcatgtgttcgtttgacatatctcaaaggaagtccttgtttcttgcatcttccttcttcataaattgcagcccaacaattgcaatcaatcaaacaag |
47076343 |
T |
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| Q |
393 |
caaatgagcattctt |
407 |
Q |
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||||| ||||||||| |
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| T |
47076344 |
caaataagcattctt |
47076358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 47076023 - 47076074
Alignment:
| Q |
66 |
ttagccttttgtaccttaatacccgaatcttgtaaacgtaatggatggatat |
117 |
Q |
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| T |
47076023 |
ttagccttttatactttaatacccgaattttgtacatgtaatggatggatat |
47076074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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