View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_low_32 (Length: 429)

Name: NF15962_low_32
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_low_32
NF15962_low_32
[»] chr7 (8 HSPs)
chr7 (19-404)||(16969073-16969455)
chr7 (24-108)||(16978504-16978588)
chr7 (19-72)||(16824928-16824981)
chr7 (19-64)||(17008845-17008890)
chr7 (24-70)||(16993095-16993141)
chr7 (314-376)||(17008518-17008580)
chr7 (24-70)||(17008719-17008765)
chr7 (323-375)||(10601061-10601113)
[»] chr4 (2 HSPs)
chr4 (19-70)||(35262169-35262220)
chr4 (340-374)||(35262481-35262515)


Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 16969455 - 16969073
Alignment:
Q  19 tggtatttctagcagaactcgtagcaagaatgttccattgtttggttgtcttcctccgaaatcgaagcggcgaagaaagtgtgatgaagaaccttttgtt 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16969455 tggtatttctagcagaactcgtagcaaaaatgttccattgtttggttgtcttcctccgaaatcgaagcggcgaagaaagagtgatgaagaaccttttgtt 16969356  T
Q  119 attttcattgatggagatgatgatggtgatgaagatatgtattttgattctgcttctgattctaagaatatgatgctaaatgaagaaccttttgtggttc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16969355 attttcattgatggagatgatgatggtgatgaagatatgtattttgaatctgcttctgattctaagaatatgatgctaaatgaagaaccttttgtggttc 16969256  T
Q  219 ctcaaggtgccaaggtaatttccattgaacatgatgattatggtgatcaagatgaagaagggtcagtgcagcaatgtgatgaaaactttgttggtgatga 318  Q
    || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16969255 ctgaaggtgccaaggtaatttccattgaacatgatgattatggtggtcaagatgaagaagggtcagtgcagcaatgtgatgaaaactttgttggtgatga 16969156  T
Q  319 agacaaccctatttcaatacattcagatgagtatggtgaaagtgatgaagaacactctaatggttctgattttgatgttgctgatg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||| ||||| ||||||||    
T  16969155 agacaaccctatttcaatacattcagatgagtatggtgaaagtgatgaagaacact---atggttctgattctgatgctgctgatg 16969073  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 16978588 - 16978504
Alignment:
Q  24 tttctagcagaactcgtagcaagaatgttccattgtttggttgtcttcctccgaaatcgaagcggcgaagaaagtgtgatgaaga 108  Q
    |||| ||||||||||| ||||||||||||||||||||  |||||||||| | |||||||||||||| ||||||| ||||||||||    
T  16978588 tttcaagcagaactcgaagcaagaatgttccattgttccgttgtcttccactgaaatcgaagcggctaagaaagagtgatgaaga 16978504  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 16824981 - 16824928
Alignment:
Q  19 tggtatttctagcagaactcgtagcaagaatgttccattgtttggttgtcttcc 72  Q
    |||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  16824981 tggtgtttctagcagaactcgtagcaaaaatgttccattgtttagttgtgttcc 16824928  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 17008890 - 17008845
Alignment:
Q  19 tggtatttctagcagaactcgtagcaagaatgttccattgtttggt 64  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||    
T  17008890 tggtctttctaacagaactcgtagcaagaatgttccattgtttggt 17008845  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 16993141 - 16993095
Alignment:
Q  24 tttctagcagaactcgtagcaagaatgttccattgtttggttgtctt 70  Q
    |||| |||||||||||||||||||||||||| |||||||||| ||||    
T  16993141 tttcgagcagaactcgtagcaagaatgttccgttgtttggttctctt 16993095  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 376
Target Start/End: Complemental strand, 17008580 - 17008518
Alignment:
Q  314 gatgaagacaaccctatttcaatacattcagatgagtatggtgaaagtgatgaagaacactct 376  Q
    |||||||| ||||| |||||||||  ||| ||||||||| |||| ||||||||||||||||||    
T  17008580 gatgaagataacccgatttcaatatgttctgatgagtatagtgagagtgatgaagaacactct 17008518  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 17008765 - 17008719
Alignment:
Q  24 tttctagcagaactcgtagcaagaatgttccattgtttggttgtctt 70  Q
    ||||| |||||||||||||||| ||||| ||||||||||||| ||||    
T  17008765 tttctggcagaactcgtagcaaaaatgtgccattgtttggttctctt 17008719  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 10601061 - 10601113
Alignment:
Q  323 aaccctatttcaatacattcagatgagtatggtgaaagtgatgaagaacactc 375  Q
    ||||| ||| |||||  ||||||||| |||||||||||||||||| |||||||    
T  10601061 aacccgattacaataatttcagatgaatatggtgaaagtgatgaaaaacactc 10601113  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 35262169 - 35262220
Alignment:
Q  19 tggtatttctagcagaactcgtagcaagaatgttccattgtttggttgtctt 70  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  35262169 tggtgtttctagcagaactcgtagcaagaatgttccgttgtttggttctctt 35262220  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 374
Target Start/End: Original strand, 35262481 - 35262515
Alignment:
Q  340 ttcagatgagtatggtgaaagtgatgaagaacact 374  Q
    |||||||||||||||||||||||||||||||||||    
T  35262481 ttcagatgagtatggtgaaagtgatgaagaacact 35262515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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