View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15962_low_33 (Length: 429)
Name: NF15962_low_33
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_33 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 143 - 429
Target Start/End: Original strand, 34027539 - 34027825
Alignment:
| Q |
143 |
aactaccactgccgtctccaacaacaccaccgccctcatcgacgccgctaccgatcaccacctcacttatcccaccttcctccgccaaatcaaatctcta |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34027539 |
aactaccactgccgtctccaacaacaccaccgccctcatcgacgccgctaccgatcaccacctcacttatcccaccttcctccgccaaatcaaatctcta |
34027638 |
T |
|
| Q |
243 |
tcttcattccttcaatcccacactactctctccaaagaccacgttgctctcatcctcatcccttcttccatacacgtcccagtactctatttctccctcc |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34027639 |
tcttcattccttcaatcccacactactctctccaaaggccacgttgctctcatcctcatcccttcttccatacacgtccccgtactctatttctccctcc |
34027738 |
T |
|
| Q |
343 |
tctccctcggcgtcaccatcgctcctgctaacccactctcctccccgtcagagttatctcatctcgttcatctcatcaatcccgtca |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34027739 |
tctccctcggcgtcaccatcgctcctgctaacccactctcctccccgtcagagttatctcatctcgttcatctcatcaatcccgtca |
34027825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 147 - 429
Target Start/End: Original strand, 34017743 - 34018025
Alignment:
| Q |
147 |
accactgccgtctccaacaacaccaccgccctcatcgacgccgctaccgatcaccacctcacttatcccaccttcctccgccaaatcaaatctctatctt |
246 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||| |||||||| || ||||||||||||||||||||||| || |||| |
|
|
| T |
34017743 |
accactgccgtgtccaacaacaccaccgccctcatcgacgccaccaccgaccaccatctcacttacccaaccttcctccgccaaatcaaatccctctctt |
34017842 |
T |
|
| Q |
247 |
cattccttcaatcccacactactctctccaaagaccacgttgctctcatcctcatcccttcttccatacacgtcccagtactctatttctccctcctctc |
346 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
34017843 |
cattcctccaatcacacactactctatccaaaggccacgtcgctctcatcctcatcccttcttccatacatgtccccgtactctatttctccctcctctc |
34017942 |
T |
|
| Q |
347 |
cctcggcgtcaccatcgctcctgctaacccactctcctccccgtcagagttatctcatctcgttcatctcatcaatcccgtca |
429 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| || || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34017943 |
cctcggcgtcaccatcgctcctgccaatccactctcttcaccttcagagttatctcatctcgttcatctcatcaatcccgtca |
34018025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 34027418 - 34027477
Alignment:
| Q |
22 |
tcgacccaaacaccggttactgttctcattccagaaccttccacagcctccgtccaatcg |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34027418 |
tcgacccaaacaccggttactgttctcattctagaaccttccacagcctccgtccaatcg |
34027477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 34017625 - 34017677
Alignment:
| Q |
29 |
aaacaccggttactgttctcattccagaaccttccacagcctccgtccaatcg |
81 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
34017625 |
aaacaccggttactgttctctttctagaaccttccatagcctccgtccaatcg |
34017677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University