View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_34 (Length: 423)
Name: NF15962_low_34
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 36366227 - 36365838
Alignment:
| Q |
18 |
ctattttccatgtactcatacactagcatcttctcatccatctgaaagctgcaaccaagtaaccgaacaagatttcgatgttgaagcttgacaatcaacc |
117 |
Q |
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| T |
36366227 |
ctattttccatgtactcatacactagcatcttctcatccatctgaaagctgcaaccaagtaaccgaacaagatttcgatgttgaagcttgacaatcaacc |
36366128 |
T |
|
| Q |
118 |
tgacctcattcttgaattcatcaacgccttgaccggaattttttgataatctcttcactgcaatctcctgaccttcaatcaacctaccctgatgtaacca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36366127 |
tgacctcattcttgaattcatcaacgccttgaccggaattttttgataatctcttcactgcaatctcctgaccttcaatcaacctaccctgatgtaagca |
36366028 |
T |
|
| Q |
218 |
tacttaatcatgttatatttaatggaccatatgtgaatattaagatttattgtggtgacagatacaaaaacatactttataaacaataccaaagcctcct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36366027 |
tacttaatcatgttatatttaatggaccatatgtgaatattaggatttattgtggttacagatacaaaaacatactttataaacaataccaaagcctcct |
36365928 |
T |
|
| Q |
318 |
tgtccaagtttattttcttcagagaaattgttagtagccattgtaatggtattaaaatcaaagaatggcaattctaggtcatccatgttc |
407 |
Q |
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| T |
36365927 |
tgtccaagtttattttcttcagagaaattgttagtagccattgtaatggtattaaaatcaaagaatggcaattcaaggtcatccatgttc |
36365838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 407
Target Start/End: Original strand, 2682650 - 2682762
Alignment:
| Q |
295 |
tataaacaataccaaagcctccttgtccaagtttattttcttcagagaaattgttagtagccattgtaatggtattaaaatcaaagaatggcaattctag |
394 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||| |||| ||||| ||||| | | | ||||||||||||||||| | |||||| ||||| |
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| T |
2682650 |
tataaacactaccaaagcctccttgtccaagtttatttgcttctaagaagttgtttgtagctaatattatggtattaaaatcaaacattggcaagtctag |
2682749 |
T |
|
| Q |
395 |
gtcatccatgttc |
407 |
Q |
| |
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|||||||||||| |
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|
| T |
2682750 |
ttcatccatgttc |
2682762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 208
Target Start/End: Original strand, 2682403 - 2682531
Alignment:
| Q |
80 |
ccgaacaagatttcgatgttgaagcttgacaatcaacctgacctcattcttgaattcatcaacgccttgaccggaattttttgataatctcttcactgca |
179 |
Q |
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|||||||||||||| ||||||||||||| |||| ||| ||||||||||||| ||||| ||||| ||||| | || ||| ||| || ||||| || ||| |
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| T |
2682403 |
ccgaacaagatttctatgttgaagcttggcaattaacttgacctcattcttaaattcttcaactccttgctctgaggtttgtgacaacctcttgacagca |
2682502 |
T |
|
| Q |
180 |
atctcctgaccttcaatcaacctaccctg |
208 |
Q |
| |
|
|| || || |||||||||||||| ||||| |
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|
| T |
2682503 |
atttcttggccttcaatcaaccttccctg |
2682531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 2672171 - 2672119
Alignment:
| Q |
84 |
acaagatttcgatgttgaagcttgacaatcaacctgacctcattcttgaattc |
136 |
Q |
| |
|
||||||||||||||||||||||| |||| | || ||||||||||||||||| |
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|
| T |
2672171 |
acaagatttcgatgttgaagcttcgcaattgatcttacctcattcttgaattc |
2672119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 47287178 - 47287113
Alignment:
| Q |
119 |
gacctcattcttgaattcatcaacgccttgaccggaattttttgataatctcttcactgcaatctc |
184 |
Q |
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|||||||||||||||||| || | ||||||||| ||| || |||||| |||||||| |||||||| |
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| T |
47287178 |
gacctcattcttgaattcttctatgccttgaccagaacttcttgatagcctcttcacagcaatctc |
47287113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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