View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_36 (Length: 421)
Name: NF15962_low_36
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_36 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Complemental strand, 45199866 - 45199446
Alignment:
| Q |
11 |
cacagatcaagaaaccatctaaggcgaaagcccgccatatttttcaaataagttctaccacaactttgtctctaatgcttttaatcctaattatatcatg |
110 |
Q |
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| T |
45199866 |
cacagatcaagaaaccatctaaggcgaaagcccgccatatttttcaaataagttctaccacaactttgtctctaatgcttttaatcctaattatatcatg |
45199767 |
T |
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| Q |
111 |
ctttgtgtgtccacttatccatcataacatttttatcttgcaatattgacattgatttcttattagctctatatcacttaacaatcatgtacaacattgc |
210 |
Q |
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| T |
45199766 |
ctttgtgtgtccacttatccatcataacatttttatcttgcaatattgacattgatttcttattagctctatatcacttaacaatcatgtacaacattgc |
45199667 |
T |
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| Q |
211 |
agattctatagttgtgctgtaatgtttttccttaggcttgagtaatacttttctatcacaaattgcatctaaagtagtccctacatttcatccaccccac |
310 |
Q |
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| T |
45199666 |
agattctatagttgtgctgtaatgtttttccttaggcttgagtaatacttttctatcacaaattgcatctaaagtagtccctacatttcatccaccccac |
45199567 |
T |
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| Q |
311 |
tccatgattcaaactat----ttg------catctctgtaatggttcttttcaaaataatgtatgcctagtactatttgtaacagtgtgtgcacaataat |
400 |
Q |
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| T |
45199566 |
tccatgattcaaactatgcaaatgaagcaccatctctgtaatggttcttttcaaaataatgtatgccttgtactatttgtaacagtgtgtgcacaataat |
45199467 |
T |
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| Q |
401 |
aatccttttgttgtggttcca |
421 |
Q |
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| T |
45199466 |
aatccttttgttgtggttcca |
45199446 |
T |
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